Analysis of interatomic Contacts of Structural Units in PDB entry:
5LWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LWM entry

There is 1 chain in PDB entry 5LWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 814ARG 1103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5LWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
861 878Right-handed alpha
Helix 2
AA2
A
909 918Right-handed alpha
Helix 3
AA3
A
919 921Right-handed 310
Helix 4
AA4
A
922 943Right-handed alpha
Helix 5
AA5
A
951 953Right-handed 310
Helix 6
AA6
A
990 994Right-handed 310
Helix 7
AA7
A
995 1002Right-handed alpha
Helix 8
AA8
A
1006 1022Right-handed alpha
Helix 9
AA9
A
1025 1028Right-handed 310
Helix 10
AB1
A
1029 1038Right-handed alpha
Helix 11
AB2
A
1045 1056Right-handed alpha
Helix 12
AB3
A
1067 1078Right-handed alpha
Helix 13
AB4
A
1081 1085Right-handed 310
Helix 14
AB5
A
1087 1103Right-handed alpha
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There are 4 sheets in PDB entry 5LWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 818first strand
Strand 2
A
886 891parallel
Strand 3
A
898 903anti-parallel
Strand 4
A
850 857anti-parallel
Strand 5
A
834 841anti-parallel
Strand 6
A
822 830anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 946first strand
Strand 2
A
972 973anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
955 959first strand
Strand 2
A
962 965anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 982first strand
Strand 2
A
1003 1005anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il