Analysis of interatomic Contacts of Structural Units in PDB entry:
5LX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LX8 entry

There is 1 chain in PDB entry 5LX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 32TRP 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5LX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
39 57Right-handed alpha
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
86 95Right-handed alpha
Helix 5
AA5
A
102 128Right-handed alpha
Helix 6
AA6
A
136 160Right-handed alpha
Helix 7
AA7
A
171 177Right-handed alpha
Helix 8
AA8
A
184 203Right-handed alpha
Helix 9
AA9
A
214 230Right-handed alpha
Helix 10
AB1
A
244 255Right-handed alpha
Helix 11
AB2
A
256 263Right-handed alpha
Helix 12
AB3
A
270 280Right-handed 310
Helix 13
AB4
A
303 307Right-handed 310
Helix 14
AB5
A
311 315Right-handed 310
Helix 15
AB6
A
323 330Right-handed alpha
Helix 16
AB7
A
358 362Right-handed alpha
Helix 17
AB8
A
425 440Right-handed alpha
Helix 18
AB9
A
443 460Right-handed alpha
Helix 19
AC1
A
467 473Right-handed alpha
Helix 20
AC2
A
487 503Right-handed alpha
Helix 21
AC3
A
508 516Right-handed alpha
Helix 22
AC4
A
518 531Right-handed alpha
Helix 23
AC5
A
534 538Right-handed 310
Helix 24
AC6
A
553 560Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5LX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
319 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
242 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
420 424anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
354 355anti-parallel
Strand 3
A
475 476parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
395 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
373 377anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
414 416anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il