Analysis of interatomic Contacts of Structural Units in PDB entry:
5LYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5LYH entry

There are 2 chains in PDB entry 5LYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1612LYS 1801
B
 LYS 1613LYS 1801
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5LYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1626 1641Right-handed alpha
Helix 2
AA2
A
1653 1672Right-handed alpha
Helix 3
AA3
A
1688 1696Right-handed alpha
Helix 4
AA4
A
1718 1724Right-handed alpha
Helix 5
AA5
B
1626 1641Right-handed alpha
Helix 6
AA6
B
1653 1672Right-handed alpha
Helix 7
AA7
B
1688 1696Right-handed alpha
Helix 8
AA8
B
1718 1724Right-handed alpha
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There are 4 sheets in PDB entry 5LYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1618 1621first strand
Strand 2
A
1644 1652anti-parallel
Strand 3
A
1791 1800anti-parallel
Strand 4
A
1736 1744anti-parallel
Strand 5
A
1677 1684anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1713 1716first strand
Strand 2
A
1782 1785anti-parallel
Strand 3
A
1772 1774anti-parallel
Strand 4
A
1748 1750parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1618 1621first strand
Strand 2
B
1644 1652anti-parallel
Strand 3
B
1791 1800anti-parallel
Strand 4
B
1736 1744anti-parallel
Strand 5
B
1677 1684anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1713 1716first strand
Strand 2
B
1782 1785anti-parallel
Strand 3
B
1772 1774anti-parallel
Strand 4
B
1748 1749parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il