Analysis of interatomic Contacts of Structural Units in PDB entry:
5M9O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5M9O entry

There are 3 chains in PDB entry 5M9O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 681GLY 896
B
GLY 112GLY 112
B
HIS 114HIS 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5M9O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
703 721Right-handed alpha
Helix 2
AA2
A
773 775Right-handed 310
Helix 3
AA3
A
781 785Right-handed 310
Helix 4
AA4
A
806 822Right-handed alpha
Helix 5
AA5
A
850 858Right-handed alpha
Helix 6
AA6
A
868 870Right-handed 310
Helix 7
AA7
A
871 888Right-handed alpha
Helix 8
AA8
A
890 894Right-handed 310
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There are 3 sheets in PDB entry 5M9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
683 690first strand
Strand 2
A
695 700anti-parallel
Strand 3
A
794 798anti-parallel
Strand 4
A
839 844parallel
Strand 5
A
824 832anti-parallel
Strand 6
A
683 690anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
769 772first strand
Strand 2
A
758 763anti-parallel
Strand 3
A
745 755anti-parallel
Strand 4
A
735 739anti-parallel
Strand 5
A
777 779anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
801 802first strand
Strand 2
A
862 863anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il