Analysis of interatomic Contacts of Structural Units in PDB entry:
5MG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MG3 entry

There are 6 chains in PDB entry 5MG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	MET 1	ARG 443
E	THR 444	PHE 508
G	SER 509	ASN 540
D	MET 1	LYS 612
F	ARG 14	LYS 302
C	GLN 57	TYR 532

There are 61 helices in PDB entry 5MG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	23	39	Right-handed alpha
Helix 2	AA2	Y	61	69	Right-handed alpha
Helix 3	AA3	Y	82	94	Right-handed alpha
Helix 4	AA4	Y	99	104	Right-handed alpha
Helix 5	AA5	Y	118	137	Right-handed alpha
Helix 6	AA6	Y	155	177	Right-handed alpha
Helix 7	AA7	Y	178	181	Right-handed 310
Helix 8	AA8	Y	185	195	Right-handed alpha
Helix 9	AA9	Y	218	225	Right-handed 310
Helix 10	AB1	Y	226	240	Right-handed alpha
Helix 11	AB2	Y	270	272	Right-handed 310
Helix 12	AB3	Y	273	294	Right-handed alpha
Helix 13	AB4	Y	304	309	Right-handed alpha
Helix 14	AB5	Y	313	330	Right-handed alpha
Helix 15	AB6	Y	366	372	Right-handed alpha
Helix 16	AB7	Y	379	384	Right-handed alpha
Helix 17	AB8	Y	385	394	Right-handed alpha
Helix 18	AB9	Y	404	420	Right-handed alpha
Helix 19	AC1	Y	422	429	Right-handed alpha
Helix 20	AC2	E	452	465	Right-handed alpha
Helix 21	AC3	E	471	495	Right-handed alpha
Helix 22	AC4	E	496	508	Right-handed alpha
Helix 23	AC5	G	517	526	Right-handed alpha
Helix 24	AC6	G	527	531	Right-handed 310
Helix 25	AC7	D	6	21	Right-handed alpha
Helix 26	AC8	D	226	229	Right-handed 310
Helix 27	AC9	D	230	239	Right-handed alpha
Helix 28	AD1	D	269	274	Right-handed alpha
Helix 29	AD2	D	302	308	Right-handed alpha
Helix 30	AD3	D	346	356	Right-handed alpha
Helix 31	AD4	D	356	361	Right-handed alpha
Helix 32	AD5	D	417	430	Right-handed alpha
Helix 33	AD6	D	444	472	Right-handed alpha
Helix 34	AD7	D	477	479	Right-handed 310
Helix 35	AD8	D	480	497	Right-handed alpha
Helix 36	AD9	D	503	534	Right-handed alpha
Helix 37	AE1	D	540	549	Right-handed alpha
Helix 38	AE2	D	550	571	Right-handed alpha
Helix 39	AE3	D	573	597	Right-handed alpha
Helix 40	AE4	D	598	606	Right-handed alpha
Helix 41	AE5	F	19	45	Right-handed alpha
Helix 42	AE6	F	67	79	Right-handed alpha
Helix 43	AE7	F	135	165	Right-handed alpha
Helix 44	AE8	F	166	191	Right-handed alpha
Helix 45	AE9	F	196	207	Right-handed alpha
Helix 46	AF1	F	211	228	Right-handed alpha
Helix 47	AF2	F	232	251	Right-handed alpha
Helix 48	AF3	F	252	267	Right-handed alpha
Helix 49	AF4	F	270	281	Right-handed alpha
Helix 50	AF5	F	287	301	Right-handed alpha
Helix 51	AF6	C	313	321	Right-handed alpha
Helix 52	AF7	C	338	347	Right-handed alpha
Helix 53	AF8	C	354	369	Right-handed alpha
Helix 54	AF9	C	371	378	Right-handed alpha
Helix 55	AG1	C	385	391	Right-handed alpha
Helix 56	AG2	C	403	411	Right-handed alpha
Helix 57	AG3	C	423	428	Right-handed alpha
Helix 58	AG4	C	429	442	Right-handed alpha
Helix 59	AG5	C	466	480	Right-handed alpha
Helix 60	AG6	C	491	506	Right-handed alpha
Helix 61	AG7	C	510	527	Right-handed alpha

There are 9 sheets in PDB entry 5MG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	256	257	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	282	first strand
Strand 2	D	319	321	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	332	first strand
Strand 2	D	340	345	anti-parallel
Strand 3	D	405	408	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	371	first strand
Strand 2	D	387	397	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	93	98	anti-parallel
Strand 3	F	55	62	anti-parallel
Strand 4	F	126	134	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	79	88	anti-parallel
Strand 3	C	69	73	anti-parallel
Strand 4	C	60	64	anti-parallel
Strand 5	C	137	139	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	188	199	anti-parallel
Strand 3	C	283	290	anti-parallel
Strand 4	C	271	278	anti-parallel
Strand 5	C	247	249	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	188	199	anti-parallel
Strand 3	C	293	295	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	154	first strand
Strand 2	C	160	168	anti-parallel
Strand 3	C	173	181	anti-parallel
Strand 4	C	300	311	anti-parallel
Strand 5	C	260	264	anti-parallel
Strand 6	C	252	256	anti-parallel
Strand 7	C	220	224	anti-parallel
Strand 8	C	231	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MG3