Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MJ6 entry

There are 2 chains in PDB entry 5MJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 157	ALA 1035
B	LEU 160	ALA 1035

There are 76 helices in PDB entry 5MJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	238	240	Right-handed 310
Helix 2	AA2	A	298	303	Right-handed alpha
Helix 3	AA3	A	355	359	Right-handed 310
Helix 4	AA4	A	383	389	Right-handed 310
Helix 5	AA5	A	390	409	Right-handed alpha
Helix 6	AA6	A	441	443	Right-handed 310
Helix 7	AA7	A	451	469	Right-handed alpha
Helix 8	AA8	A	479	482	Right-handed 310
Helix 9	AA9	A	483	502	Right-handed alpha
Helix 10	AB1	A	503	506	Right-handed 310
Helix 11	AB2	A	507	523	Right-handed alpha
Helix 12	AB3	A	536	543	Right-handed alpha
Helix 13	AB4	A	545	563	Right-handed alpha
Helix 14	AB5	A	564	580	Right-handed alpha
Helix 15	AB6	A	585	598	Right-handed alpha
Helix 16	AB7	A	602	613	Right-handed alpha
Helix 17	AB8	A	694	697	Right-handed 310
Helix 18	AB9	A	705	719	Right-handed alpha
Helix 19	AC1	A	720	723	Right-handed 310
Helix 20	AC2	A	724	742	Right-handed alpha
Helix 21	AC3	A	745	754	Right-handed alpha
Helix 22	AC4	A	755	759	Right-handed 310
Helix 23	AC5	A	761	783	Right-handed alpha
Helix 24	AC6	A	784	805	Right-handed alpha
Helix 25	AC7	A	813	830	Right-handed alpha
Helix 26	AC8	A	834	848	Right-handed alpha
Helix 27	AC9	A	859	868	Right-handed alpha
Helix 28	AD1	A	870	882	Right-handed alpha
Helix 29	AD2	A	886	898	Right-handed alpha
Helix 30	AD3	A	902	916	Right-handed alpha
Helix 31	AD4	A	920	922	Right-handed 310
Helix 32	AD5	A	923	934	Right-handed alpha
Helix 33	AD6	A	934	948	Right-handed alpha
Helix 34	AD7	A	948	956	Right-handed alpha
Helix 35	AD8	A	960	970	Right-handed alpha
Helix 36	AD9	A	976	989	Right-handed alpha
Helix 37	AE1	A	991	996	Right-handed alpha
Helix 38	AE2	A	997	1025	Right-handed alpha
Helix 39	AE3	B	238	240	Right-handed 310
Helix 40	AE4	B	298	302	Right-handed 310
Helix 41	AE5	B	355	359	Right-handed 310
Helix 42	AE6	B	383	389	Right-handed 310
Helix 43	AE7	B	390	409	Right-handed alpha
Helix 44	AE8	B	441	443	Right-handed 310
Helix 45	AE9	B	451	471	Right-handed alpha
Helix 46	AF1	B	479	482	Right-handed 310
Helix 47	AF2	B	483	502	Right-handed alpha
Helix 48	AF3	B	503	506	Right-handed 310
Helix 49	AF4	B	507	523	Right-handed alpha
Helix 50	AF5	B	536	543	Right-handed alpha
Helix 51	AF6	B	545	563	Right-handed alpha
Helix 52	AF7	B	564	580	Right-handed alpha
Helix 53	AF8	B	585	596	Right-handed alpha
Helix 54	AF9	B	602	613	Right-handed alpha
Helix 55	AG1	B	694	697	Right-handed 310
Helix 56	AG2	B	705	719	Right-handed alpha
Helix 57	AG3	B	720	723	Right-handed 310
Helix 58	AG4	B	724	740	Right-handed alpha
Helix 59	AG5	B	745	753	Right-handed alpha
Helix 60	AG6	B	754	759	Right-handed 310
Helix 61	AG7	B	761	783	Right-handed alpha
Helix 62	AG8	B	784	805	Right-handed alpha
Helix 63	AG9	B	813	830	Right-handed alpha
Helix 64	AH1	B	834	849	Right-handed alpha
Helix 65	AH2	B	859	868	Right-handed alpha
Helix 66	AH3	B	870	884	Right-handed alpha
Helix 67	AH4	B	886	898	Right-handed alpha
Helix 68	AH5	B	902	916	Right-handed alpha
Helix 69	AH6	B	920	922	Right-handed 310
Helix 70	AH7	B	923	934	Right-handed alpha
Helix 71	AH8	B	937	948	Right-handed alpha
Helix 72	AH9	B	948	956	Right-handed alpha
Helix 73	AI1	B	960	972	Right-handed alpha
Helix 74	AI2	B	976	989	Right-handed alpha
Helix 75	AI3	B	991	996	Right-handed alpha
Helix 76	AI4	B	997	1025	Right-handed alpha

There are 14 sheets in PDB entry 5MJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	215	223	anti-parallel
Strand 3	A	256	266	anti-parallel
Strand 4	A	189	200	anti-parallel
Strand 5	A	172	184	anti-parallel
Strand 6	A	314	322	parallel
Strand 7	A	343	348	anti-parallel
Strand 8	A	333	339	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	242	251	anti-parallel
Strand 3	A	233	237	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	286	293	anti-parallel
Strand 3	A	361	364	anti-parallel
Strand 4	A	326	329	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	416	422	parallel
Strand 4	A	435	439	parallel
Strand 5	A	429	430	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	582	584	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	682	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	617	624	anti-parallel
Strand 4	A	701	704	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	674	first strand
Strand 2	A	654	662	anti-parallel
Strand 3	A	687	692	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	214	223	anti-parallel
Strand 3	B	256	266	anti-parallel
Strand 4	B	189	200	anti-parallel
Strand 5	B	172	184	anti-parallel
Strand 6	B	314	322	parallel
Strand 7	B	343	348	anti-parallel
Strand 8	B	333	335	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	242	251	anti-parallel
Strand 3	B	233	237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	280	first strand
Strand 2	B	286	293	anti-parallel
Strand 3	B	361	364	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	377	382	anti-parallel
Strand 3	B	416	422	parallel
Strand 4	B	435	439	parallel
Strand 5	B	429	430	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	582	584	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	682	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	617	624	anti-parallel
Strand 4	B	701	704	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	674	first strand
Strand 2	B	654	662	anti-parallel
Strand 3	B	687	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJ6