Analysis of interatomic Contacts of Structural Units in PDB entry:
5MLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MLW entry

There are 6 chains in PDB entry 5MLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 255
B
 GLY 1069LYS 1079
C
 MET 1ILE 255
D
 GLY 1069LYS 1079
E
 MET 1GLU 256
F
 GLY 1069LYS 1078
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
141 153Right-handed alpha
Helix 5
AA5
A
209 216Right-handed alpha
Helix 6
AA6
A
217 222Right-handed 310
Helix 7
AA7
B
1072 1076Right-handed 310
Helix 8
AA8
C
9 21Right-handed alpha
Helix 9
AA9
C
55 57Right-handed 310
Helix 10
AB1
C
72 81Right-handed alpha
Helix 11
AB2
C
141 153Right-handed alpha
Helix 12
AB3
C
209 216Right-handed alpha
Helix 13
AB4
C
217 222Right-handed 310
Helix 14
AB5
D
1072 1076Right-handed 310
Helix 15
AB6
E
9 21Right-handed alpha
Helix 16
AB7
E
55 57Right-handed 310
Helix 17
AB8
E
72 81Right-handed alpha
Helix 18
AB9
E
141 153Right-handed alpha
Helix 19
AC1
E
209 216Right-handed alpha
Helix 20
AC2
E
217 222Right-handed 310
Helix 21
AC3
F
1072 1076Right-handed 310
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There are 6 sheets in PDB entry 5MLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
110 117anti-parallel
Strand 6
C
176 183anti-parallel
Strand 7
C
166 173anti-parallel
Strand 8
C
157 162anti-parallel
Strand 9
C
203 208anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
25 31anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
245 251anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
224 229anti-parallel
Strand 8
A
135 140anti-parallel
Strand 9
A
196 199anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
E
110 117anti-parallel
Strand 6
E
98 104anti-parallel
Strand 7
E
87 92anti-parallel
Strand 8
E
2 5anti-parallel
Strand 9
E
59 62anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
87 92anti-parallel
Strand 4
C
98 104anti-parallel
Strand 5
C
110 117anti-parallel
Strand 6
E
176 183anti-parallel
Strand 7
E
166 173anti-parallel
Strand 8
E
157 162anti-parallel
Strand 9
E
203 208anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
25 30anti-parallel
Strand 3
C
34 40anti-parallel
Strand 4
C
46 53anti-parallel
Strand 5
C
245 251anti-parallel
Strand 6
C
235 241anti-parallel
Strand 7
C
224 229anti-parallel
Strand 8
C
135 140anti-parallel
Strand 9
C
196 199anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 71first strand
Strand 2
E
25 31anti-parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
46 53anti-parallel
Strand 5
E
245 251anti-parallel
Strand 6
E
235 241anti-parallel
Strand 7
E
224 229anti-parallel
Strand 8
E
135 140anti-parallel
Strand 9
E
196 199anti-parallel
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