Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MYB entry

There are 2 chains in PDB entry 5MYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 543GLU 734
B
 GLY 542GLU 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5MYB

There are 7 sheets in PDB entry 5MYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
559 562anti-parallel
Strand 3
A
599 602anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 594first strand
Strand 2
A
575 582anti-parallel
Strand 3
A
610 618anti-parallel
Strand 4
A
629 632anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
654 660anti-parallel
Strand 3
A
696 700anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 730first strand
Strand 2
A
707 715anti-parallel
Strand 3
A
669 676anti-parallel
Strand 4
A
683 689anti-parallel
Strand 5
B
683 689anti-parallel
Strand 6
B
667 676anti-parallel
Strand 7
B
708 716anti-parallel
Strand 8
B
727 729anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 553first strand
Strand 2
B
559 562anti-parallel
Strand 3
B
599 602anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 594first strand
Strand 2
B
575 582anti-parallel
Strand 3
B
610 618anti-parallel
Strand 4
B
629 632anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
643 648first strand
Strand 2
B
654 660anti-parallel
Strand 3
B
696 700anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il