Analysis of interatomic Contacts of Structural Units in PDB entry:
5N4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N4W entry

There are 5 chains in PDB entry 5N4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 745
V
 THR 157ASN 193
R
 ALA 17GLU 102
B
 MET 1PRO 97
C
 MET 17CYS 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5N4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
33 39Right-handed alpha
Helix 4
AA4
A
39 44Right-handed alpha
Helix 5
AA5
A
53 79Right-handed alpha
Helix 6
AA6
A
82 93Right-handed alpha
Helix 7
AA7
A
94 105Right-handed alpha
Helix 8
AA8
A
105 111Right-handed alpha
Helix 9
AA9
A
138 152Right-handed alpha
Helix 10
AB1
A
154 169Right-handed alpha
Helix 11
AB2
A
177 187Right-handed alpha
Helix 12
AB3
A
200 207Right-handed alpha
Helix 13
AB4
A
207 228Right-handed alpha
Helix 14
AB5
A
231 254Right-handed alpha
Helix 15
AB6
A
255 257Right-handed 310
Helix 16
AB7
A
258 270Right-handed alpha
Helix 17
AB8
A
274 286Right-handed alpha
Helix 18
AB9
A
293 303Right-handed alpha
Helix 19
AC1
A
307 327Right-handed alpha
Helix 20
AC2
A
335 358Right-handed alpha
Helix 21
AC3
A
362 376Right-handed alpha
Helix 22
AC4
A
386 400Right-handed alpha
Helix 23
AC5
A
410 424Right-handed alpha
Helix 24
AC6
A
427 445Right-handed alpha
Helix 25
AC7
A
450 465Right-handed alpha
Helix 26
AC8
A
470 495Right-handed alpha
Helix 27
AC9
A
537 548Right-handed alpha
Helix 28
AD1
A
613 614Right-handed 310
Helix 29
AD2
A
616 619Right-handed 310
Helix 30
AD3
A
662 669Right-handed alpha
Helix 31
AD4
A
670 691Right-handed alpha
Helix 32
AD5
A
695 700Right-handed alpha
Helix 33
AD6
A
701 707Right-handed alpha
Helix 34
AD7
A
714 726Right-handed alpha
Helix 35
AD8
V
158 167Right-handed alpha
Helix 36
AD9
R
53 60Right-handed alpha
Helix 37
AE1
R
81 91Right-handed alpha
Helix 38
AE2
B
23 36Right-handed alpha
Helix 39
AE3
B
38 40Right-handed 310
Helix 40
AE4
C
32 37Right-handed alpha
Helix 41
AE5
C
39 47Right-handed alpha
Helix 42
AE6
C
66 83Right-handed alpha
Helix 43
AE7
C
99 110Right-handed alpha
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There are 5 sheets in PDB entry 5N4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 512first strand
Strand 2
R
27 34parallel
Strand 3
A
552 556anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 732first strand
Strand 2
A
742 743anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
70 71first strand
Strand 2
R
79 80anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
78 79anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
19 21anti-parallel
Strand 3
C
59 60parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il