Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCU entry

There are 3 chains in PDB entry 5NCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 40GLU 305
A
 LYS 307THR 369
B
 PRO 376GLU 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5NCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 59Right-handed alpha
Helix 2
AA2
A
67 80Right-handed alpha
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
100 118Right-handed alpha
Helix 5
AA5
A
139 151Right-handed alpha
Helix 6
AA6
A
163 175Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
270 277Right-handed alpha
Helix 9
AA9
A
279 290Right-handed alpha
Helix 10
AB1
A
313 319Right-handed alpha
Helix 11
AB2
A
321 325Right-handed 310
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There are 3 sheets in PDB entry 5NCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
246 252anti-parallel
Strand 6
A
226 242anti-parallel
Strand 7
A
215 220anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
246 252anti-parallel
Strand 6
A
226 242anti-parallel
Strand 7
A
291 300anti-parallel
Strand 8
B
377 380parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
123 133parallel
Strand 3
A
191 204anti-parallel
Strand 4
A
355 368anti-parallel
Strand 5
A
338 351anti-parallel
Strand 6
A
302 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il