Analysis of interatomic Contacts of Structural Units in PDB entry:
5NEU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NEU entry

There are 6 chains in PDB entry 5NEU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	THR 1	PRO 208
2	ASP 12	GLU 218
3	GLY 1	GLN 220
4	SER 15	ALA 85
A	PHE 1	LEU 594
B	GLY 5	GLU 539

There are 26 helices in PDB entry 5NEU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	14	19	Right-handed 310
Helix 2	AA2	1	52	56	Right-handed 310
Helix 3	AA3	1	60	65	Right-handed alpha
Helix 4	AA4	1	94	99	Right-handed 310
Helix 5	AA5	2	56	59	Right-handed 310
Helix 6	AA6	2	89	96	Right-handed alpha
Helix 7	AA7	2	135	143	Right-handed 310
Helix 8	AA8	3	43	51	Right-handed alpha
Helix 9	AA9	3	90	95	Right-handed alpha
Helix 10	AB1	3	137	142	Right-handed 310
Helix 11	AB2	4	67	74	Right-handed alpha
Helix 12	AB3	A	175	180	Right-handed alpha
Helix 13	AB4	A	188	195	Right-handed alpha
Helix 14	AB5	A	366	370	Right-handed 310
Helix 15	AB6	B	12	19	Right-handed alpha
Helix 16	AB7	B	104	109	Right-handed 310
Helix 17	AB8	B	110	115	Right-handed alpha
Helix 18	AB9	B	117	129	Right-handed alpha
Helix 19	AC1	B	151	156	Right-handed alpha
Helix 20	AC2	B	182	192	Right-handed alpha
Helix 21	AC3	B	204	211	Right-handed alpha
Helix 22	AC4	B	238	246	Right-handed 310
Helix 23	AC5	B	263	268	Right-handed 310
Helix 24	AC6	B	273	284	Right-handed alpha
Helix 25	AC7	B	295	307	Right-handed alpha
Helix 26	AC8	B	321	333	Right-handed alpha

There are 31 sheets in PDB entry 5NEU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	2	3	first strand
Strand 2	3	154	159	anti-parallel
Strand 3	3	105	111	anti-parallel
Strand 4	3	198	205	anti-parallel
Strand 5	3	53	54	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	2	3	first strand
Strand 2	3	154	159	anti-parallel
Strand 3	3	105	111	anti-parallel
Strand 4	3	198	205	anti-parallel
Strand 5	3	63	65	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	40	42	first strand
Strand 2	1	172	188	anti-parallel
Strand 3	1	69	83	anti-parallel
Strand 4	1	126	127	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	113	116	first strand
Strand 2	1	69	83	anti-parallel
Strand 3	1	172	188	anti-parallel
Strand 4	3	40	41	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	48	50	first strand
Strand 2	1	167	169	anti-parallel
Strand 3	1	86	89	anti-parallel
Strand 4	1	105	106	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	16	19	first strand
Strand 2	2	22	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	34	first strand
Strand 2	2	155	160	parallel
Strand 3	2	98	111	anti-parallel
Strand 4	2	205	213	anti-parallel
Strand 5	2	52	54	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	34	first strand
Strand 2	2	155	160	parallel
Strand 3	2	98	111	anti-parallel
Strand 4	2	197	203	anti-parallel
Strand 5	2	62	69	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	79	83	first strand
Strand 2	2	177	185	anti-parallel
Strand 3	2	120	127	anti-parallel
Strand 4	2	145	148	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	73	78	first strand
Strand 2	3	183	192	anti-parallel
Strand 3	3	118	126	anti-parallel
Strand 4	3	145	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	168	169	first strand
Strand 2	3	98	102	anti-parallel
Strand 3	3	210	214	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	422	426	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	66	70	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	113	114	anti-parallel
Strand 3	A	123	124	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	101	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	168	170	anti-parallel
Strand 3	A	185	187	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	239	243	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	266	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	292	295	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	327	332	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	310	311	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	376	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	534	542	anti-parallel
Strand 4	A	511	513	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	440	444	anti-parallel
Strand 4	A	577	578	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	527	first strand
Strand 2	A	491	498	anti-parallel
Strand 3	A	557	563	anti-parallel
Strand 4	A	585	588	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	28	29	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	494	497	parallel
Strand 4	B	480	486	anti-parallel
Strand 5	B	426	429	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	469	471	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	465	466	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	95	102	parallel
Strand 3	B	138	139	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	95	102	parallel
Strand 3	B	225	231	parallel
Strand 4	B	287	291	parallel
Strand 5	B	310	311	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	448	449	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	523	first strand
Strand 2	B	526	529	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NEU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NEU