Analysis of interatomic Contacts of Structural Units in PDB entry:
5NP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NP1 entry

There is 1 chain in PDB entry 5NP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 3VAL 3056
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are175 helices in PDB entry 5NP1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
38 45Right-handed alpha
Helix 4
AA4
A
59 66Right-handed alpha
Helix 5
AA5
A
67 78Right-handed alpha
Helix 6
AA6
A
94 110Right-handed alpha
Helix 7
AA7
A
115 126Right-handed alpha
Helix 8
AA8
A
146 155Right-handed alpha
Helix 9
AA9
A
156 162Right-handed alpha
Helix 10
AB1
A
167 177Right-handed alpha
Helix 11
AB2
A
183 198Right-handed alpha
Helix 12
AB3
A
204 206Right-handed 310
Helix 13
AB4
A
207 218Right-handed alpha
Helix 14
AB5
A
223 238Right-handed alpha
Helix 15
AB6
A
242 247Right-handed alpha
Helix 16
AB7
A
249 259Right-handed alpha
Helix 17
AB8
A
263 273Right-handed alpha
Helix 18
AB9
A
276 283Right-handed alpha
Helix 19
AC1
A
306 322Right-handed alpha
Helix 20
AC2
A
339 356Right-handed alpha
Helix 21
AC3
A
412 420Right-handed alpha
Helix 22
AC4
A
433 450Right-handed alpha
Helix 23
AC5
A
454 470Right-handed alpha
Helix 24
AC6
A
474 492Right-handed alpha
Helix 25
AC7
A
497 515Right-handed alpha
Helix 26
AC8
A
519 530Right-handed alpha
Helix 27
AC9
A
537 539Right-handed 310
Helix 28
AD1
A
540 546Right-handed alpha
Helix 29
AD2
A
556 567Right-handed alpha
Helix 30
AD3
A
571 575Right-handed 310
Helix 31
AD4
A
578 586Right-handed alpha
Helix 32
AD5
A
587 589Right-handed 310
Helix 33
AD6
A
603 607Right-handed 310
Helix 34
AD7
A
608 615Right-handed alpha
Helix 35
AD8
A
623 638Right-handed alpha
Helix 36
AD9
A
646 652Right-handed alpha
Helix 37
AE1
A
653 657Right-handed 310
Helix 38
AE2
A
682 684Right-handed 310
Helix 39
AE3
A
685 700Right-handed alpha
Helix 40
AE4
A
700 707Right-handed alpha
Helix 41
AE5
A
710 721Right-handed alpha
Helix 42
AE6
A
730 740Right-handed alpha
Helix 43
AE7
A
747 761Right-handed alpha
Helix 44
AE8
A
823 825Right-handed 310
Helix 45
AE9
A
826 837Right-handed alpha
Helix 46
AF1
A
843 861Right-handed alpha
Helix 47
AF2
A
877 888Right-handed alpha
Helix 48
AF3
A
922 933Right-handed alpha
Helix 49
AF4
A
944 947Right-handed 310
Helix 50
AF5
A
948 959Right-handed alpha
Helix 51
AF6
A
966 968Right-handed 310
Helix 52
AF7
A
969 982Right-handed alpha
Helix 53
AF8
A
990 1002Right-handed alpha
Helix 54
AF9
A
1014 1020Right-handed alpha
Helix 55
AG1
A
1042 1049Right-handed alpha
Helix 56
AG2
A
1056 1063Right-handed 310
Helix 57
AG3
A
1070 1088Right-handed alpha
Helix 58
AG4
A
1089 1091Right-handed 310
Helix 59
AG5
A
1105 1114Right-handed alpha
Helix 60
AG6
A
1114 1126Right-handed alpha
Helix 61
AG7
A
1132 1143Right-handed alpha
Helix 62
AG8
A
1145 1148Right-handed 310
Helix 63
AG9
A
1149 1159Right-handed alpha
Helix 64
AH1
A
1164 1175Right-handed alpha
Helix 65
AH2
A
1194 1200Right-handed 310
Helix 66
AH3
A
1213 1222Right-handed alpha
Helix 67
AH4
A
1237 1247Right-handed alpha
Helix 68
AH5
A
1254 1269Right-handed alpha
Helix 69
AH6
A
1277 1282Right-handed alpha
Helix 70
AH7
A
1283 1291Right-handed 310
Helix 71
AH8
A
1294 1300Right-handed 310
Helix 72
AH9
A
1301 1307Right-handed alpha
Helix 73
AI1
A
1334 1338Right-handed 310
Helix 74
AI2
A
1341 1347Right-handed alpha
Helix 75
AI3
A
1356 1360Right-handed 310
Helix 76
AI4
A
1362 1366Right-handed 310
Helix 77
AI5
A
1367 1373Right-handed alpha
Helix 78
AI6
A
1376 1381Right-handed alpha
Helix 79
AI7
A
1382 1388Right-handed alpha
Helix 80
AI8
A
1394 1394Right-handed 310
Helix 81
AI9
A
1395 1398Right-handed 310
Helix 82
AJ1
A
1417 1424Right-handed alpha
Helix 83
AJ2
A
1428 1434Right-handed alpha
Helix 84
AJ3
A
1436 1449Right-handed alpha
Helix 85
AJ4
A
1456 1475Right-handed alpha
Helix 86
AJ5
A
1477 1482Right-handed alpha
Helix 87
AJ6
A
1483 1501Right-handed alpha
Helix 88
AJ7
A
1514 1521Right-handed alpha
Helix 89
AJ8
A
1522 1524Right-handed 310
Helix 90
AJ9
A
1525 1530Right-handed 310
Helix 91
AK1
A
1531 1543Right-handed alpha
Helix 92
AK2
A
1550 1557Right-handed alpha
Helix 93
AK3
A
1557 1563Right-handed alpha
Helix 94
AK4
A
1569 1576Right-handed alpha
Helix 95
AK5
A
1578 1583Right-handed alpha
Helix 96
AK6
A
1592 1604Right-handed alpha
Helix 97
AK7
A
1609 1619Right-handed alpha
Helix 98
AK8
A
1620 1623Right-handed 310
Helix 99
AK9
A
1631 1649Right-handed alpha
Helix 100
AL1
A
1657 1669Right-handed alpha
Helix 101
AL2
A
1678 1683Right-handed 310
Helix 102
AL3
A
1701 1709Right-handed alpha
Helix 103
AL4
A
1713 1726Right-handed alpha
Helix 104
AL5
A
1732 1734Right-handed 310
Helix 105
AL6
A
1735 1745Right-handed alpha
Helix 106
AL7
A
1745 1756Right-handed alpha
Helix 107
AL8
A
1759 1769Right-handed alpha
Helix 108
AL9
A
1806 1810Right-handed 310
Helix 109
AM1
A
1811 1816Right-handed alpha
Helix 110
AM2
A
1822 1836Right-handed alpha
Helix 111
AM3
A
1841 1846Right-handed alpha
Helix 112
AM4
A
1847 1853Right-handed alpha
Helix 113
AM5
A
1855 1874Right-handed alpha
Helix 114
AM6
A
1876 1894Right-handed alpha
Helix 115
AM7
A
1902 1915Right-handed alpha
Helix 116
AM8
A
1925 1934Right-handed alpha
Helix 117
AM9
A
1937 1949Right-handed alpha
Helix 118
AN1
A
1950 1976Right-handed alpha
Helix 119
AN2
A
1998 2013Right-handed alpha
Helix 120
AN3
A
2014 2023Right-handed alpha
Helix 121
AN4
A
2075 2086Right-handed alpha
Helix 122
AN5
A
2095 2106Right-handed alpha
Helix 123
AN6
A
2107 2112Right-handed alpha
Helix 124
AN7
A
2113 2116Right-handed 310
Helix 125
AN8
A
2124 2135Right-handed alpha
Helix 126
AN9
A
2142 2160Right-handed alpha
Helix 127
AO1
A
2168 2191Right-handed alpha
Helix 128
AO2
A
2195 2213Right-handed alpha
Helix 129
AO3
A
2216 2221Right-handed alpha
Helix 130
AO4
A
2221 2238Right-handed alpha
Helix 131
AO5
A
2241 2266Right-handed alpha
Helix 132
AO6
A
2268 2281Right-handed alpha
Helix 133
AO7
A
2282 2285Right-handed 310
Helix 134
AO8
A
2291 2295Right-handed 310
Helix 135
AO9
A
2296 2301Right-handed alpha
Helix 136
AP1
A
2308 2324Right-handed alpha
Helix 137
AP2
A
2329 2349Right-handed alpha
Helix 138
AP3
A
2352 2357Right-handed alpha
Helix 139
AP4
A
2358 2368Right-handed alpha
Helix 140
AP5
A
2377 2404Right-handed alpha
Helix 141
AP6
A
2405 2413Right-handed alpha
Helix 142
AP7
A
2450 2461Right-handed alpha
Helix 143
AP8
A
2461 2477Right-handed alpha
Helix 144
AP9
A
2480 2482Right-handed 310
Helix 145
AQ1
A
2483 2495Right-handed alpha
Helix 146
AQ2
A
2498 2507Right-handed alpha
Helix 147
AQ3
A
2508 2511Right-handed 310
Helix 148
AQ4
A
2512 2517Right-handed alpha
Helix 149
AQ5
A
2519 2528Right-handed alpha
Helix 150
AQ6
A
2537 2551Right-handed alpha
Helix 151
AQ7
A
2552 2566Right-handed alpha
Helix 152
AQ8
A
2597 2613Right-handed alpha
Helix 153
AQ9
A
2617 2632Right-handed alpha
Helix 154
AR1
A
2658 2662Right-handed 310
Helix 155
AR2
A
2721 2742Right-handed alpha
Helix 156
AR3
A
2742 2749Right-handed alpha
Helix 157
AR4
A
2777 2785Right-handed alpha
Helix 158
AR5
A
2793 2801Right-handed alpha
Helix 159
AR6
A
2802 2804Right-handed 310
Helix 160
AR7
A
2806 2806Right-handed alpha
Helix 161
AR8
A
2814 2827Right-handed alpha
Helix 162
AR9
A
2829 2831Right-handed 310
Helix 163
AS1
A
2832 2839Right-handed alpha
Helix 164
AS2
A
2842 2867Right-handed alpha
Helix 165
AS3
A
2894 2900Right-handed 310
Helix 166
AS4
A
2910 2918Right-handed alpha
Helix 167
AS5
A
2922 2925Right-handed 310
Helix 168
AS6
A
2926 2941Right-handed alpha
Helix 169
AS7
A
2943 2954Right-handed alpha
Helix 170
AS8
A
2955 2960Right-handed 310
Helix 171
AS9
A
2965 2970Right-handed 310
Helix 172
AT1
A
2999 3017Right-handed alpha
Helix 173
AT2
A
3027 3040Right-handed alpha
Helix 174
AT3
A
3041 3048Right-handed alpha
Helix 175
AT4
A
3049 3054Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5NP1.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2700 2705first strand
Strand 2
A
2711 2716anti-parallel
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