Analysis of interatomic Contacts of Structural Units in PDB entry:
5NTN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NTN entry

There are 8 chains in PDB entry 5NTN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 264THR 508
B
 TYR 264SER 507
C
 TYR 264THR 508
D
 TYR 264SER 507
P
 THR 499GLY 506
Q
 THR 499GLY 506
R
 THR 499GLY 506
S
 THR 499HIS 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 5NTN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 285Right-handed alpha
Helix 2
AA2
A
288 295Right-handed alpha
Helix 3
AA3
A
296 298Right-handed 310
Helix 4
AA4
A
301 310Right-handed alpha
Helix 5
AA5
A
312 338Right-handed alpha
Helix 6
AA6
A
345 365Right-handed alpha
Helix 7
AA7
A
384 392Right-handed 310
Helix 8
AA8
A
393 409Right-handed alpha
Helix 9
AA9
A
413 426Right-handed alpha
Helix 10
AB1
A
435 457Right-handed alpha
Helix 11
AB2
A
459 466Right-handed 310
Helix 12
AB3
A
468 490Right-handed alpha
Helix 13
AB4
A
490 498Right-handed alpha
Helix 14
AB5
A
499 507Right-handed alpha
Helix 15
AB6
B
266 285Right-handed alpha
Helix 16
AB7
B
288 295Right-handed alpha
Helix 17
AB8
B
301 310Right-handed alpha
Helix 18
AB9
B
312 338Right-handed alpha
Helix 19
AC1
B
340 344Right-handed 310
Helix 20
AC2
B
345 365Right-handed alpha
Helix 21
AC3
B
384 392Right-handed 310
Helix 22
AC4
B
393 409Right-handed alpha
Helix 23
AC5
B
413 426Right-handed alpha
Helix 24
AC6
B
435 457Right-handed alpha
Helix 25
AC7
B
459 466Right-handed 310
Helix 26
AC8
B
468 490Right-handed alpha
Helix 27
AC9
B
490 498Right-handed alpha
Helix 28
AD1
B
499 507Right-handed alpha
Helix 29
AD2
C
266 285Right-handed alpha
Helix 30
AD3
C
288 295Right-handed alpha
Helix 31
AD4
C
301 311Right-handed alpha
Helix 32
AD5
C
312 337Right-handed alpha
Helix 33
AD6
C
345 365Right-handed alpha
Helix 34
AD7
C
384 392Right-handed 310
Helix 35
AD8
C
393 409Right-handed alpha
Helix 36
AD9
C
413 426Right-handed alpha
Helix 37
AE1
C
435 456Right-handed alpha
Helix 38
AE2
C
457 458Right-handed 310
Helix 39
AE3
C
459 464Right-handed 310
Helix 40
AE4
C
468 490Right-handed alpha
Helix 41
AE5
C
490 498Right-handed alpha
Helix 42
AE6
C
499 507Right-handed alpha
Helix 43
AE7
D
266 285Right-handed alpha
Helix 44
AE8
D
288 295Right-handed alpha
Helix 45
AE9
D
296 298Right-handed 310
Helix 46
AF1
D
301 311Right-handed alpha
Helix 47
AF2
D
312 338Right-handed alpha
Helix 48
AF3
D
338 343Right-handed alpha
Helix 49
AF4
D
345 365Right-handed alpha
Helix 50
AF5
D
384 392Right-handed 310
Helix 51
AF6
D
393 409Right-handed alpha
Helix 52
AF7
D
413 426Right-handed alpha
Helix 53
AF8
D
435 456Right-handed alpha
Helix 54
AF9
D
457 458Right-handed 310
Helix 55
AG1
D
459 464Right-handed 310
Helix 56
AG2
D
468 490Right-handed alpha
Helix 57
AG3
D
490 498Right-handed alpha
Helix 58
AG4
D
499 507Right-handed alpha
Helix 59
AG5
P
500 506Right-handed alpha
Helix 60
AG6
Q
500 506Right-handed alpha
Helix 61
AG7
R
500 505Right-handed alpha
Helix 62
AG8
S
500 506Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5NTN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 370first strand
Strand 2
B
375 378anti-parallel
Strand 3
B
381 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 370first strand
Strand 2
C
375 378anti-parallel
Strand 3
C
381 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
369 370first strand
Strand 2
D
375 378anti-parallel
Strand 3
D
381 383anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il