Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NUO entry

There are 5 chains in PDB entry 5NUO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 1	PHE 340
D	GLY 12	ASN 211
A	ALA 1	PHE 340
B	ASP 15	ASN 211
E	ALA 1	PRO 204

There are 50 helices in PDB entry 5NUO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	105	110	Right-handed alpha
Helix 2	AA2	C	144	147	Right-handed 310
Helix 3	AA3	C	165	169	Right-handed 310
Helix 4	AA4	C	197	202	Right-handed alpha
Helix 5	AA5	D	17	31	Right-handed alpha
Helix 6	AA6	D	31	36	Right-handed alpha
Helix 7	AA7	D	36	48	Right-handed alpha
Helix 8	AA8	D	49	64	Right-handed alpha
Helix 9	AA9	D	64	75	Right-handed alpha
Helix 10	AB1	D	77	94	Right-handed alpha
Helix 11	AB2	D	101	106	Right-handed alpha
Helix 12	AB3	D	107	111	Right-handed 310
Helix 13	AB4	D	117	125	Right-handed alpha
Helix 14	AB5	D	148	155	Right-handed 310
Helix 15	AB6	D	157	161	Right-handed 310
Helix 16	AB7	D	162	181	Right-handed alpha
Helix 17	AB8	D	184	190	Right-handed alpha
Helix 18	AB9	D	193	211	Right-handed alpha
Helix 19	AC1	A	105	110	Right-handed alpha
Helix 20	AC2	A	111	113	Right-handed 310
Helix 21	AC3	A	142	147	Right-handed 310
Helix 22	AC4	A	197	202	Right-handed alpha
Helix 23	AC5	B	17	31	Right-handed alpha
Helix 24	AC6	B	31	36	Right-handed alpha
Helix 25	AC7	B	36	48	Right-handed alpha
Helix 26	AC8	B	49	63	Right-handed alpha
Helix 27	AC9	B	64	74	Right-handed alpha
Helix 28	AD1	B	77	94	Right-handed alpha
Helix 29	AD2	B	101	106	Right-handed alpha
Helix 30	AD3	B	117	125	Right-handed alpha
Helix 31	AD4	B	148	155	Right-handed 310
Helix 32	AD5	B	157	161	Right-handed 310
Helix 33	AD6	B	162	180	Right-handed alpha
Helix 34	AD7	B	184	190	Right-handed alpha
Helix 35	AD8	B	193	211	Right-handed alpha
Helix 36	AD9	E	105	110	Right-handed alpha
Helix 37	AE1	E	143	147	Right-handed 310
Helix 38	AE2	E	197	202	Right-handed alpha
Helix 39	AE3	F	17	31	Right-handed alpha
Helix 40	AE4	F	36	48	Right-handed alpha
Helix 41	AE5	F	49	64	Right-handed alpha
Helix 42	AE6	F	64	74	Right-handed alpha
Helix 43	AE7	F	77	94	Right-handed alpha
Helix 44	AE8	F	101	107	Right-handed alpha
Helix 45	AE9	F	117	125	Right-handed alpha
Helix 46	AF1	F	148	155	Right-handed 310
Helix 47	AF2	F	157	161	Right-handed 310
Helix 48	AF3	F	162	181	Right-handed alpha
Helix 49	AF4	F	187	191	Right-handed 310
Helix 50	AF5	F	193	211	Right-handed alpha

There are 9 sheets in PDB entry 5NUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	36	37	first strand
Strand 3	C	40	50	first strand
Strand 4	C	55	66	anti-parallel
Strand 5	C	80	90	anti-parallel
Strand 6	C	94	102	anti-parallel
Strand 7	C	132	142	anti-parallel
Strand 8	C	151	158	anti-parallel
Strand 9	C	173	182	anti-parallel
Strand 10	C	185	195	anti-parallel
Strand 11	C	210	222	anti-parallel
Strand 12	C	225	235	anti-parallel
Strand 13	C	253	263	anti-parallel
Strand 14	C	269	283	anti-parallel
Strand 15	C	287	304	anti-parallel
Strand 16	C	307	316	anti-parallel
Strand 17	C	331	340	anti-parallel
Strand 18	C	9	23	anti-parallel
Strand 19	C	36	37	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	247	250	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	139	141	anti-parallel

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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	36	37	first strand
Strand 3	A	40	50	first strand
Strand 4	A	55	66	anti-parallel
Strand 5	A	80	90	anti-parallel
Strand 6	A	94	102	anti-parallel
Strand 7	A	132	141	anti-parallel
Strand 8	A	151	158	anti-parallel
Strand 9	A	173	182	anti-parallel
Strand 10	A	185	195	anti-parallel
Strand 11	A	210	222	anti-parallel
Strand 12	A	225	235	anti-parallel
Strand 13	A	253	263	anti-parallel
Strand 14	A	269	283	anti-parallel
Strand 15	A	287	302	anti-parallel
Strand 16	A	307	316	anti-parallel
Strand 17	A	331	340	anti-parallel
Strand 18	A	10	23	anti-parallel
Strand 19	A	36	37	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	247	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	139	141	anti-parallel

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There are 19 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	36	37	first strand
Strand 3	E	40	50	first strand
Strand 4	E	55	66	anti-parallel
Strand 5	E	80	90	anti-parallel
Strand 6	E	94	102	anti-parallel
Strand 7	E	132	141	anti-parallel
Strand 8	E	151	158	anti-parallel
Strand 9	E	173	182	anti-parallel
Strand 10	E	185	195	anti-parallel
Strand 11	E	210	222	anti-parallel
Strand 12	E	225	235	anti-parallel
Strand 13	E	253	263	anti-parallel
Strand 14	E	269	283	anti-parallel
Strand 15	E	287	304	anti-parallel
Strand 16	E	307	316	anti-parallel
Strand 17	E	331	339	anti-parallel
Strand 18	E	9	24	anti-parallel
Strand 19	E	36	37	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	242	first strand
Strand 2	E	247	250	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	139	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NUO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUO