Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NUP entry

There are 5 chains in PDB entry 5NUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PHE 342
B	ALA 1	PHE 342
C	ALA 1	PHE 342
D	ARG 13	ASN 211
E	ARG 13	GLN 50

There are 56 helices in PDB entry 5NUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	110	Right-handed alpha
Helix 2	AA2	A	111	113	Right-handed 310
Helix 3	AA3	A	142	148	Right-handed alpha
Helix 4	AA4	A	165	169	Right-handed 310
Helix 5	AA5	A	241	250	Right-handed 310
Helix 6	AA6	A	324	327	Right-handed alpha
Helix 7	AA7	B	105	110	Right-handed alpha
Helix 8	AA8	B	111	113	Right-handed 310
Helix 9	AA9	B	143	147	Right-handed 310
Helix 10	AB1	B	324	327	Right-handed alpha
Helix 11	AB2	C	105	110	Right-handed alpha
Helix 12	AB3	C	111	113	Right-handed 310
Helix 13	AB4	C	142	148	Right-handed alpha
Helix 14	AB5	C	165	169	Right-handed 310
Helix 15	AB6	C	323	326	Right-handed alpha
Helix 16	AB7	D	17	31	Right-handed alpha
Helix 17	AB8	D	31	36	Right-handed alpha
Helix 18	AB9	D	37	48	Right-handed alpha
Helix 19	AC1	D	49	75	Right-handed alpha
Helix 20	AC2	D	77	94	Right-handed alpha
Helix 21	AC3	D	101	107	Right-handed alpha
Helix 22	AC4	D	108	111	Right-handed 310
Helix 23	AC5	D	117	125	Right-handed alpha
Helix 24	AC6	D	148	154	Right-handed 310
Helix 25	AC7	D	157	161	Right-handed 310
Helix 26	AC8	D	162	182	Right-handed alpha
Helix 27	AC9	D	183	185	Right-handed 310
Helix 28	AD1	D	193	210	Right-handed alpha
Helix 29	AD2	E	17	31	Right-handed alpha
Helix 30	AD3	E	31	36	Right-handed alpha
Helix 31	AD4	E	37	48	Right-handed alpha
Helix 32	AD5	E	49	64	Right-handed alpha
Helix 33	AD6	E	64	75	Right-handed alpha
Helix 34	AD7	E	77	94	Right-handed alpha
Helix 35	AD8	E	101	107	Right-handed alpha
Helix 36	AD9	E	108	111	Right-handed 310
Helix 37	AE1	E	116	125	Right-handed alpha
Helix 38	AE2	E	147	154	Right-handed 310
Helix 39	AE3	E	157	161	Right-handed 310
Helix 40	AE4	E	162	181	Right-handed alpha
Helix 41	AE5	E	182	188	Right-handed 310
Helix 42	AE6	E	193	211	Right-handed alpha
Helix 43	AE7	F	17	31	Right-handed alpha
Helix 44	AE8	F	31	36	Right-handed alpha
Helix 45	AE9	F	37	48	Right-handed alpha
Helix 46	AF1	F	49	63	Right-handed alpha
Helix 47	AF2	F	64	75	Right-handed alpha
Helix 48	AF3	F	77	94	Right-handed alpha
Helix 49	AF4	F	101	107	Right-handed alpha
Helix 50	AF5	F	108	111	Right-handed 310
Helix 51	AF6	F	117	125	Right-handed alpha
Helix 52	AF7	F	148	154	Right-handed 310
Helix 53	AF8	F	157	161	Right-handed 310
Helix 54	AF9	F	162	181	Right-handed alpha
Helix 55	AG1	F	182	188	Right-handed 310
Helix 56	AG2	F	193	210	Right-handed alpha

There are 5 sheets in PDB entry 5NUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	36	37	first strand
Strand 3	A	40	50	first strand
Strand 4	A	56	66	anti-parallel
Strand 5	A	79	89	anti-parallel
Strand 6	A	95	101	anti-parallel
Strand 7	A	133	141	anti-parallel
Strand 8	A	151	158	anti-parallel
Strand 9	A	173	181	anti-parallel
Strand 10	A	185	195	anti-parallel
Strand 11	A	211	223	anti-parallel
Strand 12	A	226	236	anti-parallel
Strand 13	A	254	264	anti-parallel
Strand 14	A	270	284	anti-parallel
Strand 15	A	289	306	anti-parallel
Strand 16	A	309	318	anti-parallel
Strand 17	A	333	342	anti-parallel
Strand 18	A	9	23	anti-parallel
Strand 19	A	36	37	anti-parallel

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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	36	37	first strand
Strand 3	B	40	50	first strand
Strand 4	B	56	66	anti-parallel
Strand 5	B	79	89	anti-parallel
Strand 6	B	95	101	anti-parallel
Strand 7	B	133	141	anti-parallel
Strand 8	B	151	158	anti-parallel
Strand 9	B	173	181	anti-parallel
Strand 10	B	186	195	anti-parallel
Strand 11	B	211	223	anti-parallel
Strand 12	B	226	236	anti-parallel
Strand 13	B	254	264	anti-parallel
Strand 14	B	270	284	anti-parallel
Strand 15	B	289	304	anti-parallel
Strand 16	B	309	318	anti-parallel
Strand 17	B	333	342	anti-parallel
Strand 18	B	9	24	anti-parallel
Strand 19	B	36	37	anti-parallel

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There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	36	37	first strand
Strand 3	C	40	50	first strand
Strand 4	C	56	66	anti-parallel
Strand 5	C	79	91	anti-parallel
Strand 6	C	94	101	anti-parallel
Strand 7	C	133	141	anti-parallel
Strand 8	C	151	158	anti-parallel
Strand 9	C	173	180	anti-parallel
Strand 10	C	185	195	anti-parallel
Strand 11	C	211	223	anti-parallel
Strand 12	C	226	236	anti-parallel
Strand 13	C	254	264	anti-parallel
Strand 14	C	270	282	anti-parallel
Strand 15	C	291	306	anti-parallel
Strand 16	C	309	318	anti-parallel
Strand 17	C	333	342	anti-parallel
Strand 18	C	9	23	anti-parallel
Strand 19	C	36	37	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	140	141	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	139	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NUP