Analysis of interatomic Contacts of Structural Units in PDB entry:
5OQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5OQT entry

There are 2 chains in PDB entry 5OQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASN 461
C
 MET 1HIS 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5OQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
47 56Right-handed alpha
Helix 5
AA5
A
57 59Right-handed 310
Helix 6
AA6
A
60 86Right-handed alpha
Helix 7
AA7
A
91 100Right-handed alpha
Helix 8
AA8
A
101 136Right-handed alpha
Helix 9
AA9
A
144 148Right-handed 310
Helix 10
AB1
A
159 175Right-handed alpha
Helix 11
AB2
A
180 203Right-handed alpha
Helix 12
AB3
A
204 206Right-handed 310
Helix 13
AB4
A
207 211Right-handed 310
Helix 14
AB5
A
217 229Right-handed alpha
Helix 15
AB6
A
230 234Right-handed 310
Helix 16
AB7
A
235 246Right-handed 310
Helix 17
AB8
A
248 279Right-handed alpha
Helix 18
AB9
A
280 284Right-handed 310
Helix 19
AC1
A
288 297Right-handed alpha
Helix 20
AC2
A
299 335Right-handed alpha
Helix 21
AC3
A
355 370Right-handed alpha
Helix 22
AC4
A
371 400Right-handed alpha
Helix 23
AC5
A
414 429Right-handed alpha
Helix 24
AC6
A
430 431Right-handed 310
Helix 25
AC7
A
432 433Right-handed 310
Helix 26
AC8
A
434 453Right-handed alpha
Helix 27
AC9
C
2 25Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5OQT.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
349 353anti-parallel
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