Analysis of interatomic Contacts of Structural Units in PDB entry:
5P9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5P9J entry

There is 1 chain in PDB entry 5P9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 394SER 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 5P9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
438 451Right-handed alpha
Helix 3
AA3
A
482 488Right-handed alpha
Helix 4
AA4
A
489 492Right-handed 310
Helix 5
AA5
A
494 515Right-handed alpha
Helix 6
AA6
A
541 546Right-handed 310
Helix 7
AA7
A
548 552Right-handed 310
Helix 8
AA8
A
560 564Right-handed 310
Helix 9
AA9
A
565 572Right-handed alpha
Helix 10
AB1
A
575 592Right-handed alpha
Helix 11
AB2
A
602 612Right-handed alpha
Helix 12
AB3
A
623 633Right-handed alpha
Helix 13
AB4
A
637 641Right-handed 310
Helix 14
AB5
A
643 658Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5P9J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 410first strand
Strand 2
A
415 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 474anti-parallel
Strand 5
A
460 464anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
528 529anti-parallel
Strand 3
A
535 536anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il