Analysis of interatomic Contacts of Structural Units in PDB entry:
5P9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5P9M entry

There is 1 chain in PDB entry 5P9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 389SER 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5P9M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
438 451Right-handed alpha
Helix 3
AA3
A
481 488Right-handed alpha
Helix 4
AA4
A
489 492Right-handed 310
Helix 5
AA5
A
494 515Right-handed alpha
Helix 6
AA6
A
523 525Right-handed 310
Helix 7
AA7
A
541 546Right-handed 310
Helix 8
AA8
A
547 556Right-handed alpha
Helix 9
AA9
A
560 564Right-handed 310
Helix 10
AB1
A
565 572Right-handed alpha
Helix 11
AB2
A
575 592Right-handed alpha
Helix 12
AB3
A
602 612Right-handed alpha
Helix 13
AB4
A
623 633Right-handed alpha
Helix 14
AB5
A
637 641Right-handed 310
Helix 15
AB6
A
643 658Right-handed alpha
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There are 2 sheets in PDB entry 5P9M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 411first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 432anti-parallel
Strand 4
A
470 474anti-parallel
Strand 5
A
460 464anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
527 529first strand
Strand 2
A
535 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il