Analysis of interatomic Contacts of Structural Units in PDB entry:
5PAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5PAO entry

There are 2 chains in PDB entry 5PAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 149ARG 204
C
 ILE 213PRO 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5PAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 158Right-handed 310
Helix 2
AA2
A
198 204Right-handed alpha
Helix 3
AA3
C
251 256Right-handed 310
Helix 4
AA4
C
260 262Right-handed 310
Helix 5
AA5
C
325 332Right-handed alpha
Helix 6
AA6
C
333 336Right-handed 310
Helix 7
AA7
C
366 374Right-handed alpha
Helix 8
AA8
C
443 452Right-handed alpha
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There are 4 sheets in PDB entry 5PAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
169 173anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
187 189anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
358 365anti-parallel
Strand 3
C
387 390anti-parallel
Strand 4
C
435 439anti-parallel
Strand 5
C
415 422anti-parallel
Strand 6
C
407 412anti-parallel
Strand 7
C
338 343anti-parallel
Strand 8
C
358 365anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 463first strand
Strand 2
C
281 291parallel
Strand 3
C
304 308anti-parallel
Strand 4
C
247 250anti-parallel
Strand 5
C
235 244anti-parallel
Strand 6
C
227 232anti-parallel
Strand 7
C
264 268anti-parallel
Strand 8
C
281 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il