Analysis of interatomic Contacts of Structural Units in PDB entry:
5Q0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Q0S entry

There are 4 chains in PDB entry 5Q0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 247GLN 476
B
ASP 745LYS 755
C
MET 247GLN 476
D
HIS 746LYS 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5Q0S. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
250 265Right-handed alpha
Helix 2
AA2
A
269 280Right-handed alpha
Helix 3
AA3
A
283 308Right-handed alpha
Helix 4
AA4
A
311 315Right-handed 310
Helix 5
AA5
A
316 341Right-handed alpha
Helix 6
AA6
A
347 358Right-handed alpha
Helix 7
AA7
A
362 379Right-handed alpha
Helix 8
AA8
A
382 395Right-handed alpha
Helix 9
AA9
A
404 427Right-handed alpha
Helix 10
AB1
A
432 457Right-handed alpha
Helix 11
AB2
A
466 473Right-handed alpha
Helix 12
AB3
B
746 754Right-handed alpha
Helix 13
AB4
C
250 265Right-handed alpha
Helix 14
AB5
C
269 280Right-handed alpha
Helix 15
AB6
C
283 308Right-handed alpha
Helix 16
AB7
C
311 315Right-handed 310
Helix 17
AB8
C
316 341Right-handed alpha
Helix 18
AB9
C
347 358Right-handed alpha
Helix 19
AC1
C
362 379Right-handed alpha
Helix 20
AC2
C
382 395Right-handed alpha
Helix 21
AC3
C
404 427Right-handed alpha
Helix 22
AC4
C
432 450Right-handed alpha
Helix 23
AC5
C
450 457Right-handed alpha
Helix 24
AC6
C
466 473Right-handed alpha
Helix 25
AC7
D
747 754Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5Q0S

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il