Analysis of interatomic Contacts of Structural Units in PDB entry:
5RLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5RLA entry

There are 3 chains in PDB entry 5RLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 319
B
 LYS 6LEU 319
C
 LYS 6LEU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5RLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 33Right-handed 310
Helix 2
2
A
36 42Right-handed alpha
Helix 3
3
A
70 89Right-handed alpha
Helix 4
4
A
101 114Right-handed 310
Helix 5
5
A
140 142Right-handed 310
Helix 6
6
A
144 148Right-handed alpha
Helix 7
7
A
150 152Right-handed 310
Helix 8
8
A
184 192Right-handed alpha
Helix 9
9
A
200 206Right-handed alpha
Helix 10
10
A
208 220Right-handed alpha
Helix 11
11
A
233 235Right-handed 310
Helix 12
12
A
254 267Right-handed alpha
Helix 13
13
A
280 282Right-handed 310
Helix 14
14
A
286 303Right-handed alpha
Helix 15
15
B
24 33Right-handed 310
Helix 16
16
B
36 42Right-handed alpha
Helix 17
17
B
70 89Right-handed alpha
Helix 18
18
B
101 114Right-handed 310
Helix 19
19
B
140 142Right-handed 310
Helix 20
20
B
144 148Right-handed alpha
Helix 21
21
B
150 152Right-handed 310
Helix 22
22
B
184 192Right-handed alpha
Helix 23
23
B
200 206Right-handed alpha
Helix 24
24
B
208 220Right-handed alpha
Helix 25
25
B
233 235Right-handed 310
Helix 26
26
B
254 267Right-handed alpha
Helix 27
27
B
280 282Right-handed 310
Helix 28
28
B
286 303Right-handed alpha
Helix 29
29
C
24 33Right-handed 310
Helix 30
30
C
36 42Right-handed alpha
Helix 31
31
C
70 89Right-handed alpha
Helix 32
32
C
101 114Right-handed 310
Helix 33
33
C
140 142Right-handed 310
Helix 34
34
C
146 148Right-handed 310
Helix 35
35
C
150 152Right-handed 310
Helix 36
36
C
171 173Right-handed 310
Helix 37
37
C
184 192Right-handed alpha
Helix 38
38
C
200 220Right-handed alpha
Helix 39
39
C
233 235Right-handed 310
Helix 40
40
C
254 267Right-handed alpha
Helix 41
41
C
280 282Right-handed 310
Helix 42
42
C
286 303Right-handed alpha
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There are 3 sheets in PDB entry 5RLA. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
174 179parallel
Strand 3
A
119 123parallel
Strand 4
A
227 232parallel
Strand 5
A
270 276parallel
Strand 6
A
93 97parallel
Strand 7
A
8 12parallel
Strand 8
A
47 52parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
174 179parallel
Strand 3
B
119 123parallel
Strand 4
B
227 232parallel
Strand 5
B
270 276parallel
Strand 6
B
93 97parallel
Strand 7
B
8 12parallel
Strand 8
B
47 52parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 49first strand
Strand 2
C
8 12parallel
Strand 3
C
93 97parallel
Strand 4
C
270 276parallel
Strand 5
C
227 232parallel
Strand 6
C
119 123parallel
Strand 7
C
174 179parallel
Strand 8
C
196 199parallel
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