Analysis of interatomic Contacts of Structural Units in PDB entry:
5SUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SUY entry

There are 4 chains in PDB entry 5SUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 415SER 509
B
SER 415LEU 508
C
SER 415SER 509
D
GLY 416SER 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5SUY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
422 432Right-handed alpha
Helix 2
AA2
A
455 466Right-handed alpha
Helix 3
AA3
A
471 485Right-handed alpha
Helix 4
AA4
B
422 432Right-handed alpha
Helix 5
AA5
B
455 466Right-handed alpha
Helix 6
AA6
B
471 485Right-handed alpha
Helix 7
AA7
C
422 432Right-handed alpha
Helix 8
AA8
C
455 466Right-handed alpha
Helix 9
AA9
C
471 485Right-handed alpha
Helix 10
AB1
D
422 432Right-handed alpha
Helix 11
AB2
D
455 466Right-handed alpha
Helix 12
AB3
D
471 485Right-handed alpha
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There are 4 sheets in PDB entry 5SUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
440 447first strand
Strand 2
B
443 454anti-parallel
Strand 3
B
502 505anti-parallel
Strand 4
B
488 490anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 454first strand
Strand 2
A
502 505anti-parallel
Strand 3
A
488 490anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
488 490first strand
Strand 2
C
502 505anti-parallel
Strand 3
C
443 454anti-parallel
Strand 4
D
440 447anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
453 454first strand
Strand 2
D
502 505anti-parallel
Strand 3
D
488 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il