Analysis of interatomic Contacts of Structural Units in PDB entry:
5SVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5SVN entry

There are 2 chains in PDB entry 5SVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 43GLY 450
B
 ARG 43ARG 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5SVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 71Right-handed alpha
Helix 2
AA2
A
85 92Right-handed alpha
Helix 3
AA3
A
94 108Right-handed alpha
Helix 4
AA4
A
119 127Right-handed alpha
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
176 181Right-handed 310
Helix 7
AA7
A
225 243Right-handed alpha
Helix 8
AA8
A
257 274Right-handed alpha
Helix 9
AA9
A
274 281Right-handed alpha
Helix 10
AB1
A
290 299Right-handed alpha
Helix 11
AB2
A
309 325Right-handed alpha
Helix 12
AB3
A
351 360Right-handed alpha
Helix 13
AB4
A
368 387Right-handed alpha
Helix 14
AB5
A
388 408Right-handed alpha
Helix 15
AB6
A
412 421Right-handed alpha
Helix 16
AB7
A
433 449Right-handed alpha
Helix 17
AB8
B
56 70Right-handed alpha
Helix 18
AB9
B
85 92Right-handed alpha
Helix 19
AC1
B
94 108Right-handed alpha
Helix 20
AC2
B
119 127Right-handed alpha
Helix 21
AC3
B
134 144Right-handed alpha
Helix 22
AC4
B
176 181Right-handed 310
Helix 23
AC5
B
225 243Right-handed alpha
Helix 24
AC6
B
257 274Right-handed alpha
Helix 25
AC7
B
274 281Right-handed alpha
Helix 26
AC8
B
290 300Right-handed alpha
Helix 27
AC9
B
309 325Right-handed alpha
Helix 28
AD1
B
351 360Right-handed alpha
Helix 29
AD2
B
368 387Right-handed alpha
Helix 30
AD3
B
388 408Right-handed alpha
Helix 31
AD4
B
412 421Right-handed alpha
Helix 32
AD5
B
433 451Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5SVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
75 76parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
50 54parallel
Strand 3
A
109 112parallel
Strand 4
A
342 346parallel
Strand 5
A
330 335anti-parallel
Strand 6
A
146 151anti-parallel
Strand 7
A
169 173anti-parallel
Strand 8
A
305 308parallel
Strand 9
A
246 250parallel
Strand 10
A
285 289parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
216 224anti-parallel
Strand 3
B
216 224anti-parallel
Strand 4
B
182 186anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
190 198anti-parallel
Strand 3
B
190 198anti-parallel
Strand 4
B
205 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
75 76parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
50 54parallel
Strand 3
B
109 112parallel
Strand 4
B
342 346parallel
Strand 5
B
330 335anti-parallel
Strand 6
B
146 151anti-parallel
Strand 7
B
169 173anti-parallel
Strand 8
B
305 308parallel
Strand 9
B
246 250parallel
Strand 10
B
285 289parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il