Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5SXU entry

There are 10 chains in PDB entry 5SXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 10	ILE 317
B	ARG 10	ILE 317
C	ARG 10	ILE 317
D	ARG 10	ILE 317
E	ARG 10	ILE 317
F	ARG 10	ILE 317
G	ARG 10	ILE 317
H	ARG 10	ILE 317
I	ARG 10	ILE 317
J	ARG 10	ILE 317

There are 74 helices in PDB entry 5SXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	69	Right-handed alpha
Helix 2	AA2	A	201	208	Right-handed alpha
Helix 3	AA3	A	208	221	Right-handed alpha
Helix 4	AA4	A	227	253	Right-handed alpha
Helix 5	AA5	A	260	287	Right-handed alpha
Helix 6	AA6	A	288	291	Right-handed 310
Helix 7	AA7	A	295	300	Right-handed alpha
Helix 8	AA8	A	303	312	Right-handed alpha
Helix 9	AA9	B	60	69	Right-handed alpha
Helix 10	AB1	B	181	185	Right-handed 310
Helix 11	AB2	B	201	208	Right-handed alpha
Helix 12	AB3	B	208	221	Right-handed alpha
Helix 13	AB4	B	227	253	Right-handed alpha
Helix 14	AB5	B	260	281	Right-handed alpha
Helix 15	AB6	B	282	286	Right-handed 310
Helix 16	AB7	B	287	291	Right-handed 310
Helix 17	AB8	B	293	312	Right-handed alpha
Helix 18	AB9	C	60	69	Right-handed alpha
Helix 19	AC1	C	201	208	Right-handed alpha
Helix 20	AC2	C	208	221	Right-handed alpha
Helix 21	AC3	C	227	253	Right-handed alpha
Helix 22	AC4	C	260	287	Right-handed alpha
Helix 23	AC5	C	288	291	Right-handed 310
Helix 24	AC6	C	293	312	Right-handed alpha
Helix 25	AC7	D	60	69	Right-handed alpha
Helix 26	AC8	D	201	208	Right-handed alpha
Helix 27	AC9	D	208	221	Right-handed alpha
Helix 28	AD1	D	227	253	Right-handed alpha
Helix 29	AD2	D	260	281	Right-handed alpha
Helix 30	AD3	D	282	286	Right-handed 310
Helix 31	AD4	D	293	301	Right-handed alpha
Helix 32	AD5	D	303	312	Right-handed alpha
Helix 33	AD6	E	60	69	Right-handed alpha
Helix 34	AD7	E	201	208	Right-handed alpha
Helix 35	AD8	E	208	221	Right-handed alpha
Helix 36	AD9	E	227	253	Right-handed alpha
Helix 37	AE1	E	260	287	Right-handed alpha
Helix 38	AE2	E	293	301	Right-handed alpha
Helix 39	AE3	E	303	312	Right-handed alpha
Helix 40	AE4	F	60	69	Right-handed alpha
Helix 41	AE5	F	201	208	Right-handed alpha
Helix 42	AE6	F	208	220	Right-handed alpha
Helix 43	AE7	F	221	223	Right-handed 310
Helix 44	AE8	F	227	253	Right-handed alpha
Helix 45	AE9	F	260	287	Right-handed alpha
Helix 46	AF1	F	295	302	Right-handed alpha
Helix 47	AF2	F	303	312	Right-handed alpha
Helix 48	AF3	G	60	69	Right-handed alpha
Helix 49	AF4	G	201	208	Right-handed alpha
Helix 50	AF5	G	208	221	Right-handed alpha
Helix 51	AF6	G	227	253	Right-handed alpha
Helix 52	AF7	G	260	287	Right-handed alpha
Helix 53	AF8	G	295	300	Right-handed alpha
Helix 54	AF9	G	303	312	Right-handed alpha
Helix 55	AG1	H	60	69	Right-handed alpha
Helix 56	AG2	H	201	208	Right-handed alpha
Helix 57	AG3	H	208	221	Right-handed alpha
Helix 58	AG4	H	227	253	Right-handed alpha
Helix 59	AG5	H	260	284	Right-handed alpha
Helix 60	AG6	H	299	302	Right-handed 310
Helix 61	AG7	H	303	312	Right-handed alpha
Helix 62	AG8	I	60	69	Right-handed alpha
Helix 63	AG9	I	201	208	Right-handed alpha
Helix 64	AH1	I	208	221	Right-handed alpha
Helix 65	AH2	I	227	253	Right-handed alpha
Helix 66	AH3	I	260	284	Right-handed alpha
Helix 67	AH4	I	293	312	Right-handed alpha
Helix 68	AH5	J	60	69	Right-handed alpha
Helix 69	AH6	J	201	207	Right-handed alpha
Helix 70	AH7	J	208	221	Right-handed alpha
Helix 71	AH8	J	227	253	Right-handed alpha
Helix 72	AH9	J	260	284	Right-handed alpha
Helix 73	AI1	J	293	301	Right-handed alpha
Helix 74	AI2	J	302	314	Right-handed alpha

There are 28 sheets in PDB entry 5SXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	86	94	anti-parallel
Strand 3	A	99	111	anti-parallel
Strand 4	A	32	44	anti-parallel
Strand 5	A	12	27	anti-parallel
Strand 6	A	140	149	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	160	162	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	187	199	anti-parallel
Strand 4	A	167	174	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	86	94	anti-parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	32	44	anti-parallel
Strand 5	B	12	27	anti-parallel
Strand 6	B	140	149	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	187	199	anti-parallel
Strand 4	B	160	174	anti-parallel
Strand 5	I	167	169	parallel
Strand 6	I	187	199	anti-parallel
Strand 7	I	160	162	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	77	78	first strand
Strand 2	I	123	131	anti-parallel
Strand 3	I	187	199	anti-parallel
Strand 4	I	171	174	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	86	94	anti-parallel
Strand 3	C	101	111	anti-parallel
Strand 4	C	32	42	anti-parallel
Strand 5	C	12	27	anti-parallel
Strand 6	C	140	149	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	160	162	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	187	199	anti-parallel
Strand 4	C	167	174	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	86	94	anti-parallel
Strand 3	D	99	111	anti-parallel
Strand 4	D	32	44	anti-parallel
Strand 5	D	12	27	anti-parallel
Strand 6	D	140	148	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	123	131	anti-parallel
Strand 3	D	187	199	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	187	199	anti-parallel
Strand 3	D	171	174	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	59	first strand
Strand 2	E	86	94	anti-parallel
Strand 3	E	99	111	anti-parallel
Strand 4	E	32	44	anti-parallel
Strand 5	E	12	27	anti-parallel
Strand 6	E	140	149	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	188	199	anti-parallel
Strand 4	E	160	162	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	188	199	anti-parallel
Strand 4	E	167	173	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	59	first strand
Strand 2	F	86	94	anti-parallel
Strand 3	F	99	111	anti-parallel
Strand 4	F	32	44	anti-parallel
Strand 5	F	12	27	anti-parallel
Strand 6	F	140	149	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	78	first strand
Strand 2	F	123	131	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	160	161	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	78	first strand
Strand 2	F	123	131	anti-parallel
Strand 3	F	187	199	anti-parallel
Strand 4	F	167	174	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	86	94	anti-parallel
Strand 3	G	99	111	anti-parallel
Strand 4	G	32	44	anti-parallel
Strand 5	G	12	27	anti-parallel
Strand 6	G	140	149	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	G	123	131	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	G	123	131	anti-parallel
Strand 3	G	187	199	anti-parallel
Strand 4	G	167	174	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	86	94	anti-parallel
Strand 3	H	100	111	anti-parallel
Strand 4	H	32	43	anti-parallel
Strand 5	H	12	27	anti-parallel
Strand 6	H	140	149	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	78	first strand
Strand 2	H	123	131	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	160	161	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	78	first strand
Strand 2	H	123	131	anti-parallel
Strand 3	H	187	199	anti-parallel
Strand 4	H	167	174	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	59	first strand
Strand 2	I	86	94	anti-parallel
Strand 3	I	99	111	anti-parallel
Strand 4	I	32	44	anti-parallel
Strand 5	I	12	27	anti-parallel
Strand 6	I	140	149	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	86	94	anti-parallel
Strand 3	J	99	111	anti-parallel
Strand 4	J	32	44	anti-parallel
Strand 5	J	12	27	anti-parallel
Strand 6	J	140	148	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	78	first strand
Strand 2	J	123	131	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	78	first strand
Strand 2	J	123	131	anti-parallel
Strand 3	J	188	199	anti-parallel
Strand 4	J	167	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5SXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5SXU