Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T0U entry

There are 6 chains in PDB entry 5T0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 293	TYR 462
B	C 1	C 23
C	G 1	G 23
D	HIS 294	TYR 462
E	C 1	C 23
F	G 1	G 23

There are 14 helices in PDB entry 5T0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	305	317	Right-handed alpha
Helix 2	AA2	A	333	345	Right-handed alpha
Helix 3	AA3	A	362	375	Right-handed alpha
Helix 4	AA4	A	390	398	Right-handed alpha
Helix 5	AA5	A	398	403	Right-handed alpha
Helix 6	AA6	A	418	431	Right-handed alpha
Helix 7	AA7	A	448	459	Right-handed alpha
Helix 8	AA8	D	305	317	Right-handed alpha
Helix 9	AA9	D	333	345	Right-handed alpha
Helix 10	AB1	D	362	375	Right-handed alpha
Helix 11	AB2	D	390	398	Right-handed alpha
Helix 12	AB3	D	398	403	Right-handed alpha
Helix 13	AB4	D	418	430	Right-handed alpha
Helix 14	AB5	D	448	459	Right-handed alpha

There are 11 sheets in PDB entry 5T0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	302	303	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	330	331	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	359	360	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	387	388	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	415	416	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	445	446	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	323	first strand
Strand 2	D	330	331	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	352	first strand
Strand 2	D	359	360	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	387	388	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	415	416	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	438	first strand
Strand 2	D	445	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T0U