Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T1A entry

There are 2 chains in PDB entry 5T1A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 37LYS 180
A
 GLN 182PHE 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5T1A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 70Right-handed alpha
Helix 2
AA2
A
75 93Right-handed alpha
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
109 143Right-handed alpha
Helix 5
AA5
A
145 152Right-handed alpha
Helix 6
AA6
A
153 171Right-handed alpha
Helix 7
AA7
A
172 178Right-handed alpha
Helix 8
AA8
A
195 211Right-handed alpha
Helix 9
AA9
A
211 229Right-handed alpha
Helix 10
AB1
A
1002 1011Right-handed alpha
Helix 11
AB2
A
1038 1051Right-handed alpha
Helix 12
AB3
A
1059 1079Right-handed alpha
Helix 13
AB4
A
1084 1090Right-handed alpha
Helix 14
AB5
A
1092 1112Right-handed alpha
Helix 15
AB6
A
1114 1123Right-handed alpha
Helix 16
AB7
A
1125 1134Right-handed alpha
Helix 17
AB8
A
1136 1142Right-handed alpha
Helix 18
AB9
A
1142 1156Right-handed alpha
Helix 19
AC1
A
236 266Right-handed alpha
Helix 20
AC2
A
268 273Right-handed alpha
Helix 21
AC3
A
278 296Right-handed alpha
Helix 22
AC4
A
300 309Right-handed alpha
Helix 23
AC5
A
309 320Right-handed alpha
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There are 2 sheets in PDB entry 5T1A. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
187 192anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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