Analysis of interatomic Contacts of Structural Units in PDB entry:
5T1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T1I entry

There are 3 chains in PDB entry 5T1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 109SER 176
B
GLY 109SER 176
C
HIS 39ILE 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5T1I. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
115 120Right-handed 310
Helix 2
AA2
A
153 160Right-handed alpha
Helix 3
AA3
A
160 170Right-handed alpha
Helix 4
AA4
B
115 120Right-handed 310
Helix 5
AA5
B
153 160Right-handed alpha
Helix 6
AA6
B
160 171Right-handed alpha
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There are 3 sheets in PDB entry 5T1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 130first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
149 152anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 174first strand
Strand 2
C
44 48parallel
Strand 3
B
172 174anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
123 130first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
149 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il