Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T3R entry

There are 2 chains in PDB entry 5T3R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	HIS 553
D	GLN 211	ARG 910

There are 40 helices in PDB entry 5T3R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed alpha
Helix 2	AA2	A	21	23	Right-handed 310
Helix 3	AA3	A	24	39	Right-handed alpha
Helix 4	AA4	A	49	53	Right-handed 310
Helix 5	AA5	A	68	77	Right-handed alpha
Helix 6	AA6	A	84	109	Right-handed alpha
Helix 7	AA7	A	118	142	Right-handed alpha
Helix 8	AA8	A	153	160	Right-handed 310
Helix 9	AA9	A	166	183	Right-handed alpha
Helix 10	AB1	A	196	212	Right-handed alpha
Helix 11	AB2	A	226	236	Right-handed alpha
Helix 12	AB3	A	238	244	Right-handed alpha
Helix 13	AB4	A	252	262	Right-handed 310
Helix 14	AB5	A	285	291	Right-handed 310
Helix 15	AB6	A	293	297	Right-handed 310
Helix 16	AB7	A	305	311	Right-handed alpha
Helix 17	AB8	A	340	344	Right-handed alpha
Helix 18	AB9	A	407	422	Right-handed alpha
Helix 19	AC1	A	425	443	Right-handed alpha
Helix 20	AC2	A	449	455	Right-handed alpha
Helix 21	AC3	A	469	485	Right-handed alpha
Helix 22	AC4	A	490	499	Right-handed alpha
Helix 23	AC5	A	500	512	Right-handed alpha
Helix 24	AC6	A	513	515	Right-handed 310
Helix 25	AC7	A	516	520	Right-handed 310
Helix 26	AC8	A	535	542	Right-handed alpha
Helix 27	AC9	D	233	248	Right-handed alpha
Helix 28	AD1	D	294	299	Right-handed alpha
Helix 29	AD2	D	376	383	Right-handed alpha
Helix 30	AD3	D	409	417	Right-handed alpha
Helix 31	AD4	D	535	539	Right-handed 310
Helix 32	AD5	D	700	702	Right-handed 310
Helix 33	AD6	D	779	785	Right-handed alpha
Helix 34	AD7	D	789	793	Right-handed 310
Helix 35	AD8	D	815	821	Right-handed alpha
Helix 36	AD9	D	890	895	Right-handed alpha
Helix 37	AE1	D	910	914	Right-handed 310
Helix 38	AE2	D	939	941	Right-handed 310
Helix 39	AE3	D	961	966	Right-handed alpha
Helix 40	AE4	D	967	969	Right-handed 310

There are 16 sheets in PDB entry 5T3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	301	304	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	224	225	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	402	406	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	336	337	anti-parallel
Strand 3	A	457	458	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	377	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	396	398	anti-parallel

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There are 21 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	616	first strand
Strand 2	D	696	698	anti-parallel
Strand 3	D	704	716	anti-parallel
Strand 4	D	686	693	anti-parallel
Strand 5	D	620	627	anti-parallel
Strand 6	D	591	599	anti-parallel
Strand 7	D	569	580	anti-parallel
Strand 8	D	543	564	anti-parallel
Strand 9	D	502	524	anti-parallel
Strand 10	D	475	494	anti-parallel
Strand 11	D	441	460	anti-parallel
Strand 12	D	421	435	anti-parallel
Strand 13	D	357	371	anti-parallel
Strand 14	D	339	353	anti-parallel
Strand 15	D	319	331	anti-parallel
Strand 16	D	303	315	anti-parallel
Strand 17	D	212	224	anti-parallel
Strand 18	D	1006	1015	anti-parallel
Strand 19	D	972	980	anti-parallel
Strand 20	D	948	959	anti-parallel
Strand 21	D	984	986	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	616	first strand
Strand 2	D	696	698	anti-parallel
Strand 3	D	704	716	anti-parallel
Strand 4	D	740	754	anti-parallel
Strand 5	D	761	777	anti-parallel
Strand 6	D	859	869	anti-parallel
Strand 7	D	872	882	anti-parallel
Strand 8	D	948	959	anti-parallel
Strand 9	D	984	986	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	265	first strand
Strand 2	D	271	277	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	465	first strand
Strand 2	D	468	469	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	640	first strand
Strand 2	D	674	675	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	723	first strand
Strand 2	D	733	737	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	804	806	first strand
Strand 2	D	850	853	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	812	first strand
Strand 2	D	833	835	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	943	945	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T3R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T3R