Analysis of interatomic Contacts of Structural Units in PDB entry:
5T46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T46 entry

There are 4 chains in PDB entry 5T46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31LYS 206
B
 GLU 608ASP 642
C
 ASN 30LYS 206
D
 GLU 607ASP 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5T46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 77Right-handed alpha
Helix 2
AA2
A
121 124Right-handed alpha
Helix 3
AA3
A
126 138Right-handed alpha
Helix 4
AA3
A
173 187Right-handed alpha
Helix 5
AA4
A
200 204Right-handed alpha
Helix 6
AA6
B
614 620Right-handed alpha
Helix 7
AA7
C
56 59Right-handed alpha
Helix 8
AA8
C
69 77Right-handed alpha
Helix 9
AA9
C
121 124Right-handed alpha
Helix 10
AB1
C
126 138Right-handed alpha
Helix 11
AB2
C
173 187Right-handed alpha
Helix 12
AB3
C
200 204Right-handed alpha
Helix 13
AB4
D
614 620Right-handed alpha
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There are 2 sheets in PDB entry 5T46. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 68first strand
Strand 2
A
39 48anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
196 199anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 68first strand
Strand 2
C
39 48anti-parallel
Strand 3
C
90 95anti-parallel
Strand 4
C
149 155anti-parallel
Strand 5
C
162 167anti-parallel
Strand 6
C
111 116anti-parallel
Strand 7
C
196 199anti-parallel
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