Analysis of interatomic Contacts of Structural Units in PDB entry:
5T8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T8Y entry

There are 3 chains in PDB entry 5T8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 2LEU 375
B
ASN 2LYS 376
X
A 29 U 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5T8Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
53 59Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
98 101Right-handed 310
Helix 6
AA6
A
104 123Right-handed alpha
Helix 7
AA7
A
139 146Right-handed alpha
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
226 231Right-handed alpha
Helix 11
AB2
A
241 246Right-handed alpha
Helix 12
AB3
A
247 251Right-handed 310
Helix 13
AB4
A
258 262Right-handed 310
Helix 14
AB5
A
264 269Right-handed alpha
Helix 15
AB6
A
272 278Right-handed 310
Helix 16
AB7
A
279 287Right-handed alpha
Helix 17
AB8
A
290 294Right-handed 310
Helix 18
AB9
A
297 312Right-handed alpha
Helix 19
AC1
A
313 315Right-handed 310
Helix 20
AC2
A
316 327Right-handed alpha
Helix 21
AC3
A
329 344Right-handed alpha
Helix 22
AC4
A
345 347Right-handed 310
Helix 23
AC5
A
348 359Right-handed alpha
Helix 24
AC6
A
361 375Right-handed alpha
Helix 25
AC7
B
3 18Right-handed alpha
Helix 26
AC8
B
30 43Right-handed alpha
Helix 27
AC9
B
53 59Right-handed alpha
Helix 28
AD1
B
59 64Right-handed alpha
Helix 29
AD2
B
98 101Right-handed 310
Helix 30
AD3
B
104 123Right-handed alpha
Helix 31
AD4
B
139 146Right-handed alpha
Helix 32
AD5
B
192 198Right-handed alpha
Helix 33
AD6
B
214 219Right-handed alpha
Helix 34
AD7
B
241 246Right-handed alpha
Helix 35
AD8
B
247 251Right-handed 310
Helix 36
AD9
B
264 269Right-handed alpha
Helix 37
AE1
B
271 276Right-handed alpha
Helix 38
AE2
B
279 287Right-handed alpha
Helix 39
AE3
B
290 294Right-handed 310
Helix 40
AE4
B
297 312Right-handed alpha
Helix 41
AE5
B
313 315Right-handed 310
Helix 42
AE6
B
316 327Right-handed alpha
Helix 43
AE7
B
329 344Right-handed alpha
Helix 44
AE8
B
345 347Right-handed 310
Helix 45
AE9
B
348 359Right-handed alpha
Helix 46
AF1
B
361 374Right-handed alpha
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There are 6 sheets in PDB entry 5T8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 25first strand
Strand 2
A
69 76anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
129 131anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
95 96first strand
Strand 2
A
236 238parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
151 152first strand
Strand 2
A
158 159anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
21 26first strand
Strand 2
B
69 76anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
129 131anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
95 96first strand
Strand 2
B
236 238parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
151 152first strand
Strand 2
B
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il