Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5TDR entry
There are 3 chains in PDB entry 5TDR
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
MET 0 | LYS 69 |
B
|
ALA 1 | THR 3 |
B
|
GLN 5 | THR 11 |
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There are 3
helices in PDB entry 5TDR. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 29 |
32 | Right-handed 310 |
Helix 2 |
AA2 | A
| 35 |
39 | Right-handed 310 |
Helix 3 |
AA3 | A
| 54 |
69 | Right-handed alpha |
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There is
1 sheet (AA1) in PDB entry 5TDR.
There are 3
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 25 |
27 | first strand |
Strand 2 |
A
| 15 |
18 | anti-parallel |
Strand 3 |
B
| 2 |
5 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il