Analysis of interatomic Contacts of Structural Units in PDB entry:
5TF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TF6 entry

There are 4 chains in PDB entry 5TF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 33ASN 399
B
G 30 C 100
C
MET 33GLN 398
D
G 30 C 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5TF6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
37 41Right-handed alpha
Helix 2
AA2
A
53 62Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
89 98Right-handed alpha
Helix 5
AA5
A
129 139Right-handed alpha
Helix 6
AA6
A
167 179Right-handed alpha
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
203 208Right-handed alpha
Helix 9
AA9
A
223 232Right-handed alpha
Helix 10
AB1
A
233 235Right-handed 310
Helix 11
AB2
A
262 270Right-handed alpha
Helix 12
AB3
A
271 273Right-handed 310
Helix 13
AB4
A
289 302Right-handed alpha
Helix 14
AB5
A
306 312Right-handed alpha
Helix 15
AB6
A
324 335Right-handed alpha
Helix 16
AB7
A
339 341Right-handed 310
Helix 17
AB8
A
350 353Right-handed 310
Helix 18
AB9
A
361 373Right-handed alpha
Helix 19
AC1
A
386 399Right-handed alpha
Helix 20
AC2
C
37 40Right-handed 310
Helix 21
AC3
C
53 62Right-handed alpha
Helix 22
AC4
C
63 65Right-handed 310
Helix 23
AC5
C
89 98Right-handed alpha
Helix 24
AC6
C
129 139Right-handed alpha
Helix 25
AC7
C
167 179Right-handed alpha
Helix 26
AC8
C
194 198Right-handed 310
Helix 27
AC9
C
205 209Right-handed 310
Helix 28
AD1
C
223 232Right-handed alpha
Helix 29
AD2
C
233 235Right-handed 310
Helix 30
AD3
C
262 269Right-handed alpha
Helix 31
AD4
C
270 273Right-handed 310
Helix 32
AD5
C
289 302Right-handed alpha
Helix 33
AD6
C
306 311Right-handed alpha
Helix 34
AD7
C
324 336Right-handed alpha
Helix 35
AD8
C
339 341Right-handed 310
Helix 36
AD9
C
350 353Right-handed 310
Helix 37
AE1
C
361 373Right-handed alpha
Helix 38
AE2
C
386 396Right-handed alpha
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There are 15 sheets in PDB entry 5TF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 74first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
110 113anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 104first strand
Strand 2
A
107 108anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 148first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
189 192anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
182 183first strand
Strand 2
A
186 187anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
237 241first strand
Strand 2
A
254 260anti-parallel
Strand 3
A
211 217anti-parallel
Strand 4
A
280 286anti-parallel
Strand 5
A
275 277anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 349first strand
Strand 2
A
354 359anti-parallel
Strand 3
A
313 317anti-parallel
Strand 4
A
383 385anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
376 377first strand
Strand 2
A
380 381anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
67 74first strand
Strand 2
C
81 87anti-parallel
Strand 3
C
42 48anti-parallel
Strand 4
C
110 113anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
103 104first strand
Strand 2
C
107 108anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
144 148first strand
Strand 2
C
160 165anti-parallel
Strand 3
C
118 122anti-parallel
Strand 4
C
189 192anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
182 183first strand
Strand 2
C
186 187anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
237 241first strand
Strand 2
C
254 260anti-parallel
Strand 3
C
211 217anti-parallel
Strand 4
C
283 286anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
276 277first strand
Strand 2
C
280 281anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 349first strand
Strand 2
C
354 359anti-parallel
Strand 3
C
313 317anti-parallel
Strand 4
C
383 385anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
376 377first strand
Strand 2
C
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il