Analysis of interatomic Contacts of Structural Units in PDB entry:
5TKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TKD entry

There are 2 chains in PDB entry 5TKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 581LEU 866
B
 PHE 581THR 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5TKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
585 587Right-handed 310
Helix 2
AA2
A
648 664Right-handed alpha
Helix 3
AA3
A
694 702Right-handed alpha
Helix 4
AA4
A
707 728Right-handed alpha
Helix 5
AA5
A
736 738Right-handed 310
Helix 6
AA6
A
763 767Right-handed 310
Helix 7
AA7
A
768 775Right-handed alpha
Helix 8
AA8
A
780 784Right-handed 310
Helix 9
AA9
A
793 809Right-handed alpha
Helix 10
AB1
A
819 829Right-handed alpha
Helix 11
AB2
A
842 849Right-handed alpha
Helix 12
AB3
A
852 856Right-handed 310
Helix 13
AB4
A
858 866Right-handed alpha
Helix 14
AB5
B
585 587Right-handed 310
Helix 15
AB6
B
648 664Right-handed alpha
Helix 16
AB7
B
694 702Right-handed alpha
Helix 17
AB8
B
707 728Right-handed alpha
Helix 18
AB9
B
736 738Right-handed 310
Helix 19
AC1
B
763 767Right-handed 310
Helix 20
AC2
B
768 775Right-handed alpha
Helix 21
AC3
B
780 784Right-handed 310
Helix 22
AC4
B
793 809Right-handed alpha
Helix 23
AC5
B
819 829Right-handed alpha
Helix 24
AC6
B
842 849Right-handed alpha
Helix 25
AC7
B
852 856Right-handed 310
Helix 26
AC8
B
858 867Right-handed alpha
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There are 4 sheets in PDB entry 5TKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 598first strand
Strand 2
A
601 608anti-parallel
Strand 3
A
638 644anti-parallel
Strand 4
A
682 688anti-parallel
Strand 5
A
673 679anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 744first strand
Strand 2
A
754 757anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
589 598first strand
Strand 2
B
601 608anti-parallel
Strand 3
B
637 644anti-parallel
Strand 4
B
682 688anti-parallel
Strand 5
B
673 679anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
740 744first strand
Strand 2
B
754 757anti-parallel
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