Analysis of interatomic Contacts of Structural Units in PDB entry:
5TKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TKV entry

There are 2 chains in PDB entry 5TKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 543
B
 MET 1ALA 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5TKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
71 78Right-handed alpha
Helix 4
AA4
A
85 87Right-handed 310
Helix 5
AA5
A
92 105Right-handed alpha
Helix 6
AA6
A
117 132Right-handed alpha
Helix 7
AA7
A
150 165Right-handed alpha
Helix 8
AA8
A
188 201Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
231 233Right-handed 310
Helix 11
AB2
A
243 245Right-handed 310
Helix 12
AB3
A
246 253Right-handed alpha
Helix 13
AB4
A
255 264Right-handed alpha
Helix 14
AB5
A
273 285Right-handed alpha
Helix 15
AB6
A
301 304Right-handed 310
Helix 16
AB7
A
305 319Right-handed alpha
Helix 17
AB8
A
330 337Right-handed alpha
Helix 18
AB9
A
338 342Right-handed 310
Helix 19
AC1
A
357 371Right-handed alpha
Helix 20
AC2
A
379 393Right-handed alpha
Helix 21
AC3
A
452 458Right-handed alpha
Helix 22
AC4
A
477 484Right-handed alpha
Helix 23
AC5
A
515 520Right-handed 310
Helix 24
AC6
A
526 542Right-handed alpha
Helix 25
AC7
B
17 31Right-handed alpha
Helix 26
AC8
B
48 52Right-handed 310
Helix 27
AC9
B
53 58Right-handed alpha
Helix 28
AD1
B
71 80Right-handed alpha
Helix 29
AD2
B
85 87Right-handed 310
Helix 30
AD3
B
92 105Right-handed alpha
Helix 31
AD4
B
117 132Right-handed alpha
Helix 32
AD5
B
150 165Right-handed alpha
Helix 33
AD6
B
188 201Right-handed alpha
Helix 34
AD7
B
217 229Right-handed alpha
Helix 35
AD8
B
231 233Right-handed 310
Helix 36
AD9
B
243 245Right-handed 310
Helix 37
AE1
B
246 253Right-handed alpha
Helix 38
AE2
B
255 264Right-handed alpha
Helix 39
AE3
B
273 285Right-handed alpha
Helix 40
AE4
B
301 304Right-handed 310
Helix 41
AE5
B
305 319Right-handed alpha
Helix 42
AE6
B
330 337Right-handed alpha
Helix 43
AE7
B
338 342Right-handed 310
Helix 44
AE8
B
357 371Right-handed alpha
Helix 45
AE9
B
379 393Right-handed alpha
Helix 46
AF1
B
415 419Right-handed 310
Helix 47
AF2
B
452 458Right-handed alpha
Helix 48
AF3
B
477 483Right-handed alpha
Helix 49
AF4
B
515 520Right-handed 310
Helix 50
AF5
B
526 542Right-handed alpha
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There are 10 sheets in PDB entry 5TKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
36 42parallel
Strand 3
A
136 141parallel
Strand 4
A
4 10parallel
Strand 5
A
169 176parallel
Strand 6
A
207 212parallel
Strand 7
A
235 239parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
68 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
185 186anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 329first strand
Strand 2
A
288 296parallel
Strand 3
A
346 349parallel
Strand 4
A
375 378parallel
Strand 5
A
509 512parallel
Strand 6
A
498 502anti-parallel
Strand 7
A
487 491anti-parallel
Strand 8
A
440 448anti-parallel
Strand 9
A
462 469anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
411 414parallel
Strand 3
A
472 473anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
36 42parallel
Strand 3
B
136 141parallel
Strand 4
B
4 10parallel
Strand 5
B
169 176parallel
Strand 6
B
207 212parallel
Strand 7
B
235 239parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
68 69anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
185 186anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 329first strand
Strand 2
B
289 296parallel
Strand 3
B
346 349parallel
Strand 4
B
375 378parallel
Strand 5
B
509 512parallel
Strand 6
B
498 502anti-parallel
Strand 7
B
487 491anti-parallel
Strand 8
B
440 448anti-parallel
Strand 9
B
462 469anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
411 414parallel
Strand 3
B
472 473anti-parallel
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