Analysis of interatomic Contacts of Structural Units in PDB entry:
5TTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TTU entry

There is 1 chain in PDB entry 5TTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 815TRP 1099
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5TTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
818 820Right-handed 310
Helix 2
AA2
A
861 877Right-handed alpha
Helix 3
AA3
A
909 918Right-handed alpha
Helix 4
AA4
A
919 921Right-handed 310
Helix 5
AA5
A
922 943Right-handed alpha
Helix 6
AA6
A
951 953Right-handed 310
Helix 7
AA7
A
990 994Right-handed 310
Helix 8
AA8
A
995 1002Right-handed alpha
Helix 9
AA9
A
1006 1022Right-handed alpha
Helix 10
AB1
A
1025 1028Right-handed 310
Helix 11
AB2
A
1029 1038Right-handed alpha
Helix 12
AB3
A
1045 1056Right-handed alpha
Helix 13
AB4
A
1067 1078Right-handed alpha
Helix 14
AB5
A
1081 1085Right-handed 310
Helix 15
AB6
A
1087 1099Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5TTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 829first strand
Strand 2
A
835 841anti-parallel
Strand 3
A
850 856anti-parallel
Strand 4
A
899 903anti-parallel
Strand 5
A
886 890anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 946first strand
Strand 2
A
972 973anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
955 959first strand
Strand 2
A
962 965anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 982first strand
Strand 2
A
1003 1005anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il