Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TUD entry

There are 5 chains in PDB entry 5TUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 54	CYS 397
B	ASP 1	GLY 211
C	GLU 1	HIS 235
D	HIS 55	CYS 397
E	ASP 1	CYS 133

There are 40 helices in PDB entry 5TUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	82	Right-handed alpha
Helix 2	AA2	A	87	106	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	159	Right-handed alpha
Helix 5	AA5	A	167	188	Right-handed alpha
Helix 6	AA6	A	188	193	Right-handed alpha
Helix 7	AA7	A	201	205	Right-handed 310
Helix 8	AA8	A	214	226	Right-handed alpha
Helix 9	AA9	A	226	1017	Right-handed alpha
Helix 10	AB1	A	1022	1041	Right-handed alpha
Helix 11	AB2	A	1059	1081	Right-handed alpha
Helix 12	AB3	A	1083	337	Right-handed alpha
Helix 13	AB4	A	337	350	Right-handed alpha
Helix 14	AB5	A	354	380	Right-handed alpha
Helix 15	AB6	A	384	396	Right-handed alpha
Helix 16	AB7	B	78	82	Right-handed 310
Helix 17	AB8	B	120	125	Right-handed alpha
Helix 18	AB9	B	182	186	Right-handed alpha
Helix 19	AC1	C	201	206	Right-handed alpha
Helix 20	AC2	D	56	82	Right-handed alpha
Helix 21	AC3	D	83	86	Right-handed 310
Helix 22	AC4	D	87	106	Right-handed alpha
Helix 23	AC5	D	106	117	Right-handed alpha
Helix 24	AC6	D	126	159	Right-handed alpha
Helix 25	AC7	D	167	188	Right-handed alpha
Helix 26	AC8	D	188	193	Right-handed alpha
Helix 27	AC9	D	201	205	Right-handed 310
Helix 28	AD1	D	214	226	Right-handed alpha
Helix 29	AD2	D	226	1018	Right-handed alpha
Helix 30	AD3	D	1022	1044	Right-handed alpha
Helix 31	AD4	D	1060	1081	Right-handed alpha
Helix 32	AD5	D	1083	337	Right-handed alpha
Helix 33	AD6	D	337	350	Right-handed alpha
Helix 34	AD7	D	354	380	Right-handed alpha
Helix 35	AD8	D	384	396	Right-handed alpha
Helix 36	AD9	E	78	82	Right-handed 310
Helix 37	AE1	E	120	125	Right-handed alpha
Helix 38	AE2	E	182	186	Right-handed alpha
Helix 39	AE3	F	141	145	Right-handed 310
Helix 40	AE4	F	201	206	Right-handed alpha

There are 25 sheets in PDB entry 5TUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	C	102	104	anti-parallel
Strand 3	C	109	111	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	20	25	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	61	65	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	105	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	33	37	anti-parallel
Strand 4	B	84	88	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	204	205	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	149	first strand
Strand 2	B	190	196	anti-parallel
Strand 3	B	208	209	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	44	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	177	179	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	209	214	anti-parallel
Strand 3	C	219	224	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	190	191	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	F	102	104	anti-parallel
Strand 3	F	109	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	61	65	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	49	anti-parallel
Strand 6	E	52	53	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	96	97	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	128	138	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	158	162	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	153	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	190	196	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	22	25	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	121	125	parallel
Strand 3	F	93	98	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	44	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	121	125	parallel
Strand 3	F	93	98	anti-parallel
Strand 4	F	116	117	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	78	83	anti-parallel
Strand 3	F	68	73	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	137	first strand
Strand 2	F	149	157	anti-parallel
Strand 3	F	190	199	anti-parallel
Strand 4	F	177	184	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	168	first strand
Strand 2	F	209	214	anti-parallel
Strand 3	F	219	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TUD