Analysis of interatomic Contacts of Structural Units in PDB entry:
5U17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U17 entry

There are 6 chains in PDB entry 5U17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	VAL 269
B	GLY 1	SER 199
C	MET 0	VAL 269
D	GLY 1	PRO 200
E	ASN 1	ALA 244
F	ILE 1	VAL 85

There are 25 helices in PDB entry 5U17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	52	Right-handed alpha
Helix 2	AA2	A	55	85	Right-handed alpha
Helix 3	AA3	A	133	145	Right-handed alpha
Helix 4	AA4	A	146	159	Right-handed alpha
Helix 5	AA5	A	159	172	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed alpha
Helix 7	AA7	B	79	83	Right-handed 310
Helix 8	AA8	B	162	165	Right-handed 310
Helix 9	AA9	C	47	54	Right-handed alpha
Helix 10	AB1	C	55	85	Right-handed alpha
Helix 11	AB2	C	133	145	Right-handed alpha
Helix 12	AB3	C	146	159	Right-handed alpha
Helix 13	AB4	C	159	172	Right-handed alpha
Helix 14	AB5	C	172	177	Right-handed alpha
Helix 15	AB6	D	79	83	Right-handed 310
Helix 16	AB7	D	162	165	Right-handed 310
Helix 17	AB8	D	181	186	Right-handed alpha
Helix 18	AB9	E	82	86	Right-handed 310
Helix 19	AC1	E	117	121	Right-handed 310
Helix 20	AC2	E	132	140	Right-handed alpha
Helix 21	AC3	E	199	203	Right-handed alpha
Helix 22	AC4	G	82	86	Right-handed 310
Helix 23	AC5	G	117	121	Right-handed 310
Helix 24	AC6	G	132	140	Right-handed alpha
Helix 25	AC7	G	199	204	Right-handed alpha

There are 34 sheets in PDB entry 5U17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	91	100	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	226	227	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	254	260	anti-parallel
Strand 3	A	263	268	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	60	65	anti-parallel
Strand 5	B	53	57	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	103	108	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	32	37	anti-parallel
Strand 5	B	44	49	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	103	108	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	97	99	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	166	175	anti-parallel
Strand 3	B	131	135	anti-parallel
Strand 4	B	117	123	anti-parallel
Strand 5	G	125	130	anti-parallel
Strand 6	G	141	151	anti-parallel
Strand 7	G	189	198	anti-parallel
Strand 8	G	171	173	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	166	175	anti-parallel
Strand 3	B	131	135	anti-parallel
Strand 4	B	117	123	anti-parallel
Strand 5	G	125	130	anti-parallel
Strand 6	G	141	151	anti-parallel
Strand 7	G	189	198	anti-parallel
Strand 8	G	178	179	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	22	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	91	100	anti-parallel
Strand 6	C	106	114	anti-parallel
Strand 7	C	117	123	anti-parallel
Strand 8	C	128	131	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	197	205	anti-parallel
Strand 3	C	238	245	anti-parallel
Strand 4	C	225	227	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	197	205	anti-parallel
Strand 3	C	238	245	anti-parallel
Strand 4	C	231	232	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	254	260	anti-parallel
Strand 4	C	263	268	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	60	65	anti-parallel
Strand 5	D	53	57	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	103	108	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	32	37	anti-parallel
Strand 5	D	43	49	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	103	108	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	130	137	anti-parallel
Strand 3	D	166	175	anti-parallel
Strand 4	D	152	153	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	130	137	anti-parallel
Strand 3	D	166	175	anti-parallel
Strand 4	D	157	161	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	74	78	anti-parallel
Strand 4	E	64	68	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	31	37	anti-parallel
Strand 5	E	44	49	anti-parallel
Strand 6	E	56	57	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	178	179	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	208	215	anti-parallel
Strand 4	E	234	241	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	50	51	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	11	first strand
Strand 2	F	21	30	anti-parallel
Strand 3	F	62	70	anti-parallel
Strand 4	F	55	56	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	91	94	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	74	78	anti-parallel
Strand 4	G	64	68	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	110	115	parallel
Strand 3	G	87	94	anti-parallel
Strand 4	G	31	37	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	54	57	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	110	115	parallel
Strand 3	G	87	94	anti-parallel
Strand 4	G	105	106	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	167	first strand
Strand 2	G	156	162	anti-parallel
Strand 3	G	208	215	anti-parallel
Strand 4	G	234	241	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	50	51	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	55	56	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	36	41	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U17

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U17