Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2H entry

There are 2 chains in PDB entry 5U2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 34PHE 350
B
 HIS 34ALA 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5U2H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 49Right-handed alpha
Helix 2
AA2
A
89 94Right-handed alpha
Helix 3
AA3
A
182 186Right-handed 310
Helix 4
AA4
A
231 239Right-handed alpha
Helix 5
AA5
A
241 249Right-handed alpha
Helix 6
AA6
A
329 350Right-handed alpha
Helix 7
AA7
B
35 48Right-handed alpha
Helix 8
AA8
B
131 135Right-handed 310
Helix 9
AA9
B
182 186Right-handed 310
Helix 10
AB1
B
231 239Right-handed alpha
Helix 11
AB2
B
241 249Right-handed alpha
Helix 12
AB3
B
334 347Right-handed alpha
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There are 9 sheets in PDB entry 5U2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
304 328anti-parallel
Strand 3
A
250 259parallel
Strand 4
A
271 277anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
147 154anti-parallel
Strand 3
A
160 168anti-parallel
Strand 4
A
101 120anti-parallel
Strand 5
A
304 328anti-parallel
Strand 6
A
291 301anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 66first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
203 206anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 66first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
228 230anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 77first strand
Strand 2
A
80 88anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 66first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
228 230anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
83 88anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
147 154anti-parallel
Strand 3
B
160 168anti-parallel
Strand 4
B
101 120anti-parallel
Strand 5
B
304 324anti-parallel
Strand 6
B
250 259parallel
Strand 7
B
272 276anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
147 154anti-parallel
Strand 3
B
160 168anti-parallel
Strand 4
B
101 120anti-parallel
Strand 5
B
304 324anti-parallel
Strand 6
B
292 301anti-parallel
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