Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2V entry

There are 7 chains in PDB entry 5U2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 0VAL 269
B
ILE 1MET 99
G
GLY 1SER 199
H
GLY 3ALA 244
C
MET 0VAL 269
D
ILE 1ASP 96
E
GLY 1TYR 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5U2V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
55 85Right-handed alpha
Helix 3
AA3
A
133 145Right-handed alpha
Helix 4
AA4
A
146 159Right-handed alpha
Helix 5
AA5
A
159 172Right-handed alpha
Helix 6
AA6
A
172 177Right-handed alpha
Helix 7
AA7
G
79 83Right-handed 310
Helix 8
AA8
G
162 165Right-handed 310
Helix 9
AA9
G
181 186Right-handed alpha
Helix 10
AB1
H
82 86Right-handed 310
Helix 11
AB2
H
117 121Right-handed 310
Helix 12
AB3
H
132 140Right-handed alpha
Helix 13
AB4
H
199 204Right-handed alpha
Helix 14
AB5
C
47 52Right-handed alpha
Helix 15
AB6
C
55 85Right-handed alpha
Helix 16
AB7
C
133 145Right-handed alpha
Helix 17
AB8
C
146 159Right-handed alpha
Helix 18
AB9
C
159 172Right-handed alpha
Helix 19
AC1
C
172 177Right-handed alpha
Helix 20
AC2
E
79 83Right-handed 310
Helix 21
AC3
E
181 186Right-handed alpha
Helix 22
AC4
F
82 86Right-handed 310
Helix 23
AC5
F
117 121Right-handed 310
Helix 24
AC6
F
132 140Right-handed alpha
Helix 25
AC7
F
199 203Right-handed alpha
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There are 35 sheets in PDB entry 5U2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
91 100anti-parallel
Strand 6
A
106 114anti-parallel
Strand 7
A
117 123anti-parallel
Strand 8
A
128 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 190first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 220first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
254 260anti-parallel
Strand 4
A
263 269anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 45first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
91 94anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 5first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
70 75anti-parallel
Strand 4
G
60 65anti-parallel
Strand 5
G
53 57anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
9 13first strand
Strand 2
G
103 108parallel
Strand 3
G
84 91anti-parallel
Strand 4
G
32 37anti-parallel
Strand 5
G
44 49anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
9 13first strand
Strand 2
G
103 108parallel
Strand 3
G
84 91anti-parallel
Strand 4
G
97 99anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
117 121first strand
Strand 2
G
131 135anti-parallel
Strand 3
G
166 175anti-parallel
Strand 4
G
151 153anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
117 121first strand
Strand 2
G
131 135anti-parallel
Strand 3
G
166 175anti-parallel
Strand 4
G
157 161anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
4 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
74 78anti-parallel
Strand 4
H
64 68anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 14first strand
Strand 2
H
110 115parallel
Strand 3
H
87 94anti-parallel
Strand 4
H
31 37anti-parallel
Strand 5
H
44 51anti-parallel
Strand 6
H
54 57anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 14first strand
Strand 2
H
110 115parallel
Strand 3
H
87 94anti-parallel
Strand 4
H
105 106anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
189 198anti-parallel
Strand 4
H
171 173anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
189 198anti-parallel
Strand 4
H
178 179anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
165 167first strand
Strand 2
H
156 162anti-parallel
Strand 3
H
208 215anti-parallel
Strand 4
H
234 241anti-parallel
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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
44 45first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
22 28anti-parallel
Strand 4
C
3 12anti-parallel
Strand 5
C
91 100anti-parallel
Strand 6
C
106 114anti-parallel
Strand 7
C
117 123anti-parallel
Strand 8
C
128 131anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
183 187first strand
Strand 2
C
199 205anti-parallel
Strand 3
C
238 241anti-parallel
Strand 4
C
231 232anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
219 220first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
255 260anti-parallel
Strand 4
C
263 268anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 51anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
55 56anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
44 45first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
91 94anti-parallel
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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 5first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
60 65anti-parallel
Strand 5
E
53 57anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 13first strand
Strand 2
E
103 108parallel
Strand 3
E
84 91anti-parallel
Strand 4
E
32 37anti-parallel
Strand 5
E
44 49anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 13first strand
Strand 2
E
103 108parallel
Strand 3
E
84 91anti-parallel
Strand 4
E
97 99anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 120first strand
Strand 2
E
130 135anti-parallel
Strand 3
E
166 175anti-parallel
Strand 4
E
151 153anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 120first strand
Strand 2
E
130 135anti-parallel
Strand 3
E
166 175anti-parallel
Strand 4
E
157 161anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
74 78anti-parallel
Strand 4
F
65 68anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
110 115parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
31 37anti-parallel
Strand 5
F
44 49anti-parallel
Strand 6
F
56 57anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 14first strand
Strand 2
F
110 115parallel
Strand 3
F
87 94anti-parallel
Strand 4
F
105 106anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
125 129first strand
Strand 2
F
141 151anti-parallel
Strand 3
F
189 198anti-parallel
Strand 4
F
171 173anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
125 129first strand
Strand 2
F
141 151anti-parallel
Strand 3
F
189 198anti-parallel
Strand 4
F
178 179anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
165 167first strand
Strand 2
F
156 162anti-parallel
Strand 3
F
208 215anti-parallel
Strand 4
F
234 241anti-parallel
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