Analysis of interatomic Contacts of Structural Units in PDB entry:
5U3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U3Y entry

There are 2 chains in PDB entry 5U3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 171ASP 439
B
ALA 173ASP 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5U3Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
172 190Right-handed alpha
Helix 2
AA2
A
193 202Right-handed alpha
Helix 3
AA3
A
215 225Right-handed alpha
Helix 4
AA4
A
240 266Right-handed alpha
Helix 5
AA5
A
267 272Right-handed alpha
Helix 6
AA6
A
274 295Right-handed alpha
Helix 7
AA7
A
314 319Right-handed alpha
Helix 8
AA8
A
328 340Right-handed alpha
Helix 9
AA9
A
344 357Right-handed alpha
Helix 10
AB1
A
366 389Right-handed alpha
Helix 11
AB2
A
394 424Right-handed alpha
Helix 12
AB3
A
430 437Right-handed alpha
Helix 13
AB4
B
174 190Right-handed alpha
Helix 14
AB5
B
193 201Right-handed alpha
Helix 15
AB6
B
215 225Right-handed alpha
Helix 16
AB7
B
240 266Right-handed alpha
Helix 17
AB8
B
267 272Right-handed alpha
Helix 18
AB9
B
274 294Right-handed alpha
Helix 19
AC1
B
306 308Right-handed 310
Helix 20
AC2
B
314 319Right-handed alpha
Helix 21
AC3
B
328 340Right-handed alpha
Helix 22
AC4
B
344 357Right-handed alpha
Helix 23
AC5
B
366 389Right-handed alpha
Helix 24
AC6
B
394 424Right-handed alpha
Helix 25
AC7
B
430 437Right-handed alpha
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There are 2 sheets in PDB entry 5U3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
211 213first strand
Strand 2
A
310 313parallel
Strand 3
A
302 305anti-parallel
Strand 4
A
298 299anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
211 213first strand
Strand 2
B
310 313parallel
Strand 3
B
302 305anti-parallel
Strand 4
B
298 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il