Analysis of interatomic Contacts of Structural Units in PDB entry:
5UFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UFR entry

There are 2 chains in PDB entry 5UFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 265GLN 487
B
 ALA 265GLN 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5UFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
266 285Right-handed alpha
Helix 2
AA2
A
288 295Right-handed alpha
Helix 3
AA3
A
296 298Right-handed 310
Helix 4
AA4
A
301 310Right-handed alpha
Helix 5
AA5
A
312 337Right-handed alpha
Helix 6
AA6
A
338 344Right-handed alpha
Helix 7
AA7
A
345 365Right-handed alpha
Helix 8
AA8
A
384 392Right-handed 310
Helix 9
AA9
A
393 409Right-handed alpha
Helix 10
AB1
A
413 426Right-handed alpha
Helix 11
AB2
A
435 457Right-handed alpha
Helix 12
AB3
A
461 466Right-handed alpha
Helix 13
AB4
A
470 476Right-handed alpha
Helix 14
AB5
A
477 481Right-handed 310
Helix 15
AB6
A
482 487Right-handed 310
Helix 16
AB7
B
266 285Right-handed alpha
Helix 17
AB8
B
288 295Right-handed alpha
Helix 18
AB9
B
296 298Right-handed 310
Helix 19
AC1
B
301 310Right-handed alpha
Helix 20
AC2
B
312 337Right-handed alpha
Helix 21
AC3
B
338 342Right-handed 310
Helix 22
AC4
B
345 366Right-handed alpha
Helix 23
AC5
B
384 392Right-handed 310
Helix 24
AC6
B
393 409Right-handed alpha
Helix 25
AC7
B
413 426Right-handed alpha
Helix 26
AC8
B
435 457Right-handed alpha
Helix 27
AC9
B
459 465Right-handed 310
Helix 28
AD1
B
470 476Right-handed alpha
Helix 29
AD2
B
477 481Right-handed 310
Helix 30
AD3
B
482 487Right-handed 310
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There are 2 sheets in PDB entry 5UFR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 370first strand
Strand 2
B
375 378anti-parallel
Strand 3
B
381 383anti-parallel
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