Analysis of interatomic Contacts of Structural Units in PDB entry:
5UHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UHD entry

There are 8 chains in PDB entry 5UHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 3ASN 226
B
ARG 6ILE 232
C
SER 28GLU 1153
D
ASP 3ALA 1281
E
GLY 28GLU 108
F
ASP 207ASP 528
H
T 1 G 23
G
C 5 A 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 5UHD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
108 110Right-handed 310
Helix 5
AA5
A
148 156Right-handed 310
Helix 6
AA6
A
203 220Right-handed alpha
Helix 7
AA7
A
221 223Right-handed 310
Helix 8
AA8
B
30 45Right-handed alpha
Helix 9
AA9
B
72 82Right-handed alpha
Helix 10
AB1
B
149 153Right-handed 310
Helix 11
AB2
B
203 224Right-handed alpha
Helix 12
AB3
C
54 66Right-handed alpha
Helix 13
AB4
C
67 78Right-handed alpha
Helix 14
AB5
C
84 94Right-handed alpha
Helix 15
AB6
C
118 126Right-handed alpha
Helix 16
AB7
C
234 242Right-handed alpha
Helix 17
AB8
C
244 252Right-handed alpha
Helix 18
AB9
C
255 264Right-handed alpha
Helix 19
AC1
C
269 282Right-handed alpha
Helix 20
AC2
C
291 299Right-handed alpha
Helix 21
AC3
C
309 321Right-handed alpha
Helix 22
AC4
C
334 350Right-handed alpha
Helix 23
AC5
C
380 407Right-handed alpha
Helix 24
AC6
C
408 412Right-handed 310
Helix 25
AC7
C
413 418Right-handed alpha
Helix 26
AC8
C
420 434Right-handed alpha
Helix 27
AC9
C
444 452Right-handed alpha
Helix 28
AD1
C
476 480Right-handed 310
Helix 29
AD2
C
532 538Right-handed alpha
Helix 30
AD3
C
564 566Right-handed 310
Helix 31
AD4
C
582 586Right-handed 310
Helix 32
AD5
C
590 594Right-handed 310
Helix 33
AD6
C
596 600Right-handed 310
Helix 34
AD7
C
601 613Right-handed alpha
Helix 35
AD8
C
629 638Right-handed alpha
Helix 36
AD9
C
739 744Right-handed alpha
Helix 37
AE1
C
780 784Right-handed 310
Helix 38
AE2
C
815 825Right-handed alpha
Helix 39
AE3
C
900 904Right-handed 310
Helix 40
AE4
C
918 922Right-handed 310
Helix 41
AE5
C
928 943Right-handed alpha
Helix 42
AE6
C
954 958Right-handed 310
Helix 43
AE7
C
960 963Right-handed 310
Helix 44
AE8
C
981 991Right-handed alpha
Helix 45
AE9
C
1036 1041Right-handed alpha
Helix 46
AF1
C
1069 1080Right-handed alpha
Helix 47
AF2
C
1081 1090Right-handed alpha
Helix 48
AF3
C
1095 1108Right-handed alpha
Helix 49
AF4
C
1118 1130Right-handed alpha
Helix 50
AF5
D
16 24Right-handed alpha
Helix 51
AF6
D
84 90Right-handed 310
Helix 52
AF7
D
104 107Right-handed 310
Helix 53
AF8
D
112 118Right-handed alpha
Helix 54
AF9
D
121 130Right-handed alpha
Helix 55
AG1
D
140 147Right-handed alpha
Helix 56
AG2
D
147 187Right-handed alpha
Helix 57
AG3
D
190 193Right-handed 310
Helix 58
AG4
D
194 228Right-handed alpha
Helix 59
AG5
D
237 249Right-handed alpha
Helix 60
AG6
D
257 267Right-handed alpha
Helix 61
AG7
D
269 283Right-handed alpha
Helix 62
AG8
D
285 305Right-handed alpha
Helix 63
AG9
D
308 311Right-handed 310
Helix 64
AH1
D
321 325Right-handed 310
Helix 65
AH2
D
339 361Right-handed alpha
Helix 66
AH3
D
363 383Right-handed alpha
Helix 67
AH4
D
402 406Right-handed 310
Helix 68
AH5
D
411 417Right-handed alpha
Helix 69
AH6
D
445 452Right-handed alpha
Helix 70
AH7
D
452 463Right-handed alpha
Helix 71
AH8
D
468 479Right-handed alpha
Helix 72
AH9
D
482 491Right-handed alpha
Helix 73
AI1
D
505 507Right-handed 310
Helix 74
AI2
D
528 533Right-handed alpha
Helix 75
AI3
D
548 559Right-handed alpha
Helix 76
AI4
D
579 589Right-handed alpha
Helix 77
AI5
D
614 625Right-handed alpha
Helix 78
AI6
D
643 652Right-handed alpha
Helix 79
AI7
D
668 675Right-handed alpha
Helix 80
AI8
D
689 703Right-handed alpha
Helix 81
AI9
D
705 726Right-handed alpha
Helix 82
AJ1
D
741 762Right-handed alpha
Helix 83
AJ2
D
766 793Right-handed alpha
Helix 84
AJ3
D
797 804Right-handed alpha
Helix 85
AJ4
D
810 819Right-handed alpha
Helix 86
AJ5
D
845 881Right-handed alpha
Helix 87
AJ6
D
915 920Right-handed alpha
Helix 88
AJ7
D
945 955Right-handed alpha
Helix 89
AJ8
D
976 980Right-handed alpha
Helix 90
AJ9
D
994 1005Right-handed alpha
Helix 91
AK1
D
1027 1036Right-handed alpha
Helix 92
AK2
D
1117 1145Right-handed alpha
Helix 93
AK3
D
1150 1160Right-handed alpha
Helix 94
AK4
D
1183 1193Right-handed alpha
Helix 95
AK5
D
1209 1216Right-handed alpha
Helix 96
AK6
D
1219 1225Right-handed alpha
Helix 97
AK7
D
1228 1239Right-handed alpha
Helix 98
AK8
D
1247 1255Right-handed alpha
Helix 99
AK9
D
1260 1263Right-handed 310
Helix 100
AL1
D
1264 1269Right-handed alpha
Helix 101
AL2
E
33 37Right-handed 310
Helix 102
AL3
E
39 45Right-handed alpha
Helix 103
AL4
E
49 74Right-handed alpha
Helix 104
AL5
E
90 101Right-handed alpha
Helix 105
AL6
F
209 222Right-handed alpha
Helix 106
AL7
F
226 236Right-handed alpha
Helix 107
AL8
F
242 270Right-handed alpha
Helix 108
AL9
F
274 299Right-handed alpha
Helix 109
AM1
F
299 308Right-handed alpha
Helix 110
AM2
F
309 311Right-handed 310
Helix 111
AM3
F
316 334Right-handed alpha
Helix 112
AM4
F
342 363Right-handed alpha
Helix 113
AM5
F
369 391Right-handed alpha
Helix 114
AM6
F
395 404Right-handed alpha
Helix 115
AM7
F
406 417Right-handed alpha
Helix 116
AM8
F
434 438Right-handed 310
Helix 117
AM9
F
446 461Right-handed alpha
Helix 118
AN1
F
470 479Right-handed alpha
Helix 119
AN2
F
488 496Right-handed alpha
Helix 120
AN3
F
501 512Right-handed alpha
Helix 121
AN4
F
514 520Right-handed alpha
Helix 122
AN5
F
524 528Right-handed 310
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There are 42 sheets in PDB entry 5UHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 13first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
189 198anti-parallel
Strand 4
A
171 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 99first strand
Strand 2
A
134 144anti-parallel
Strand 3
A
47 56anti-parallel
Strand 4
A
162 163anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 87first strand
Strand 2
A
116 118anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 106first strand
Strand 2
A
124 126anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 147first strand
Strand 2
A
166 167anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 13first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
190 198anti-parallel
Strand 4
B
171 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
93 100first strand
Strand 2
B
133 144anti-parallel
Strand 3
B
47 56anti-parallel
Strand 4
B
161 163anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
85 87first strand
Strand 2
B
116 118anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
103 106first strand
Strand 2
B
124 128anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
39 40first strand
Strand 2
C
972 973parallel
Strand 3
C
626 627parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
96 97first strand
Strand 2
C
103 112anti-parallel
Strand 3
C
130 141anti-parallel
Strand 4
C
147 158anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 168first strand
Strand 2
C
171 175anti-parallel
Strand 3
C
437 439anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
376 379first strand
Strand 2
C
177 181anti-parallel
Strand 3
C
454 456parallel
Strand 4
C
497 499anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
184 191first strand
Strand 2
C
198 205anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
213 216first strand
Strand 2
C
222 225anti-parallel
Strand 3
C
232 233anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
354 356first strand
Strand 2
C
362 364anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
505 506first strand
Strand 2
C
512 519anti-parallel
Strand 3
C
524 531anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
505 506first strand
Strand 2
C
512 519anti-parallel
Strand 3
C
578 580anti-parallel
Strand 4
C
541 542parallel
Strand 5
C
558 562anti-parallel
Strand 6
C
568 572anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
642 643first strand
Strand 2
C
701 704anti-parallel
Strand 3
C
687 688anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
667 671first strand
Strand 2
C
657 662anti-parallel
Strand 3
C
648 653anti-parallel
Strand 4
C
695 696anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
676 677first strand
Strand 2
C
683 684anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
885 886first strand
Strand 2
C
1023 1032anti-parallel
Strand 3
C
717 723anti-parallel
Strand 4
C
915 917parallel
Strand 5
C
735 738anti-parallel
Strand 6
C
895 899parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
885 886first strand
Strand 2
C
1023 1032anti-parallel
Strand 3
C
1007 1008anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
765 766first strand
Strand 2
C
749 762anti-parallel
Strand 3
C
865 877anti-parallel
Strand 4
C
845 854anti-parallel
Strand 5
C
795 796anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
768 769first strand
Strand 2
C
805 808anti-parallel
Strand 3
C
832 834anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
801 803first strand
Strand 2
C
837 838anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
944 945first strand
Strand 2
C
965 966anti-parallel
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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1042 1044first strand
Strand 2
D
425 432anti-parallel
Strand 3
D
540 544anti-parallel
Strand 4
D
496 499anti-parallel
Strand 5
D
509 517anti-parallel
Strand 6
D
440 444parallel
Strand 7
D
522 524anti-parallel
Strand 8
D
425 432parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1067 1068first strand
Strand 2
D
420 421anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1133 1138first strand
Strand 2
D
9 14anti-parallel
Strand 3
D
1242 1244anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
93 102first strand
Strand 2
D
313 319anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
234 235first strand
Strand 2
D
134 139anti-parallel
Strand 3
D
252 255anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
327 329first strand
Strand 2
D
335 337anti-parallel
Strand 3
F
421 422parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
611 612first strand
Strand 2
D
632 637parallel
Strand 3
D
662 667anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
886 888first strand
Strand 2
D
974 975parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
897 900first strand
Strand 2
D
959 963anti-parallel
Strand 3
D
924 925anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
902 904first strand
Strand 2
D
910 912anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
929 930first strand
Strand 2
D
936 938anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
981 982first strand
Strand 2
D
987 988anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1075 1079first strand
Strand 2
D
1062 1068anti-parallel
Strand 3
D
1051 1055anti-parallel
Strand 4
D
1104 1105anti-parallel
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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1181 1182first strand
Strand 2
D
1164 1167anti-parallel
Strand 3
D
1203 1205anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1272 1274first strand
Strand 2
E
104 106anti-parallel
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