Analysis of interatomic Contacts of Structural Units in PDB entry:
5UHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UHK entry

There are 4 chains in PDB entry 5UHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 58GLY 392
B
 MET 543PRO 694
C
 ARG 58GLY 392
D
 MET 543PRO 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5UHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 88Right-handed alpha
Helix 2
AA2
A
112 129Right-handed alpha
Helix 3
AA3
A
147 163Right-handed alpha
Helix 4
AA4
A
181 188Right-handed alpha
Helix 5
AA5
A
190 206Right-handed alpha
Helix 6
AA6
A
220 224Right-handed 310
Helix 7
AA7
A
231 241Right-handed alpha
Helix 8
AA8
A
260 272Right-handed alpha
Helix 9
AA9
A
284 288Right-handed 310
Helix 10
AB1
A
300 307Right-handed 310
Helix 11
AB2
A
317 320Right-handed 310
Helix 12
AB3
A
321 335Right-handed alpha
Helix 13
AB4
A
375 389Right-handed alpha
Helix 14
AB5
B
554 565Right-handed alpha
Helix 15
AB6
B
572 587Right-handed alpha
Helix 16
AB7
B
607 631Right-handed alpha
Helix 17
AB8
B
633 639Right-handed alpha
Helix 18
AB9
B
640 662Right-handed alpha
Helix 19
AC1
B
683 692Right-handed alpha
Helix 20
AC2
C
74 88Right-handed alpha
Helix 21
AC3
C
112 129Right-handed alpha
Helix 22
AC4
C
147 164Right-handed alpha
Helix 23
AC5
C
181 188Right-handed alpha
Helix 24
AC6
C
190 206Right-handed alpha
Helix 25
AC7
C
231 241Right-handed alpha
Helix 26
AC8
C
260 272Right-handed alpha
Helix 27
AC9
C
284 288Right-handed 310
Helix 28
AD1
C
300 307Right-handed 310
Helix 29
AD2
C
317 320Right-handed 310
Helix 30
AD3
C
321 334Right-handed alpha
Helix 31
AD4
C
375 388Right-handed alpha
Helix 32
AD5
D
554 565Right-handed alpha
Helix 33
AD6
D
572 587Right-handed alpha
Helix 34
AD7
D
605 631Right-handed alpha
Helix 35
AD8
D
633 661Right-handed alpha
Helix 36
AD9
D
683 692Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5UHK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
92 95parallel
Strand 3
A
132 137parallel
Strand 4
A
168 172parallel
Strand 5
A
212 215parallel
Strand 6
A
245 249parallel
Strand 7
A
276 279parallel
Strand 8
A
309 312parallel
Strand 9
A
61 66parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 66first strand
Strand 2
C
92 95parallel
Strand 3
C
132 137parallel
Strand 4
C
168 172parallel
Strand 5
C
212 215parallel
Strand 6
C
246 249parallel
Strand 7
C
276 279parallel
Strand 8
C
309 312parallel
Strand 9
C
61 66parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il