Analysis of interatomic Contacts of Structural Units in PDB entry:
5UJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UJM entry

There are 5 chains in PDB entry 5UJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 490GLU 861
B
 SER 284GLU 574
C
 LYS 41TRP 709
D
 LEU 17SER 432
E
 VAL 8ASP 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 5UJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
493 498Right-handed alpha
Helix 2
AA2
A
508 524Right-handed alpha
Helix 3
AA3
A
539 557Right-handed alpha
Helix 4
AA4
A
577 587Right-handed alpha
Helix 5
AA5
A
593 605Right-handed alpha
Helix 6
AA6
A
622 626Right-handed 310
Helix 7
AA7
A
630 639Right-handed alpha
Helix 8
AA8
A
640 642Right-handed 310
Helix 9
AA9
A
657 661Right-handed 310
Helix 10
AB1
A
682 693Right-handed alpha
Helix 11
AB2
A
706 713Right-handed alpha
Helix 12
AB3
A
719 735Right-handed alpha
Helix 13
AB4
A
747 757Right-handed alpha
Helix 14
AB5
A
761 770Right-handed alpha
Helix 15
AB6
A
771 789Right-handed alpha
Helix 16
AB7
A
795 809Right-handed alpha
Helix 17
AB8
A
815 829Right-handed alpha
Helix 18
AB9
A
836 842Right-handed 310
Helix 19
AC1
A
850 860Right-handed alpha
Helix 20
AC2
B
285 308Right-handed alpha
Helix 21
AC3
B
319 329Right-handed alpha
Helix 22
AC4
B
347 358Right-handed alpha
Helix 23
AC5
B
368 381Right-handed alpha
Helix 24
AC6
B
404 415Right-handed alpha
Helix 25
AC7
B
428 433Right-handed alpha
Helix 26
AC8
B
434 441Right-handed alpha
Helix 27
AC9
B
473 482Right-handed alpha
Helix 28
AD1
B
485 502Right-handed alpha
Helix 29
AD2
B
512 523Right-handed alpha
Helix 30
AD3
B
528 542Right-handed alpha
Helix 31
AD4
B
562 574Right-handed alpha
Helix 32
AD5
C
42 81Right-handed alpha
Helix 33
AD6
C
111 113Right-handed 310
Helix 34
AD7
C
114 128Right-handed alpha
Helix 35
AD8
C
144 158Right-handed alpha
Helix 36
AD9
C
160 164Right-handed 310
Helix 37
AE1
C
189 193Right-handed 310
Helix 38
AE2
C
196 202Right-handed alpha
Helix 39
AE3
C
226 240Right-handed alpha
Helix 40
AE4
C
255 263Right-handed alpha
Helix 41
AE5
C
264 271Right-handed alpha
Helix 42
AE6
C
280 292Right-handed alpha
Helix 43
AE7
C
303 316Right-handed alpha
Helix 44
AE8
C
320 337Right-handed alpha
Helix 45
AE9
C
338 345Right-handed 310
Helix 46
AF1
C
347 358Right-handed alpha
Helix 47
AF2
C
359 367Right-handed alpha
Helix 48
AF3
C
372 378Right-handed alpha
Helix 49
AF4
C
381 389Right-handed alpha
Helix 50
AF5
C
390 424Right-handed alpha
Helix 51
AF6
C
434 445Right-handed alpha
Helix 52
AF7
C
450 464Right-handed alpha
Helix 53
AF8
C
464 485Right-handed alpha
Helix 54
AF9
C
492 506Right-handed alpha
Helix 55
AG1
C
549 560Right-handed alpha
Helix 56
AG2
C
584 592Right-handed alpha
Helix 57
AG3
C
595 606Right-handed alpha
Helix 58
AG4
C
629 640Right-handed alpha
Helix 59
AG5
C
645 651Right-handed alpha
Helix 60
AG6
C
651 657Right-handed alpha
Helix 61
AG7
C
678 691Right-handed alpha
Helix 62
AG8
D
18 29Right-handed alpha
Helix 63
AG9
D
40 56Right-handed alpha
Helix 64
AH1
D
72 86Right-handed alpha
Helix 65
AH2
D
87 94Right-handed alpha
Helix 66
AH3
D
106 118Right-handed alpha
Helix 67
AH4
D
131 141Right-handed alpha
Helix 68
AH5
D
160 165Right-handed alpha
Helix 69
AH6
D
170 183Right-handed alpha
Helix 70
AH7
D
197 202Right-handed 310
Helix 71
AH8
D
203 210Right-handed alpha
Helix 72
AH9
D
222 235Right-handed alpha
Helix 73
AI1
D
245 258Right-handed alpha
Helix 74
AI2
D
259 271Right-handed alpha
Helix 75
AI3
D
275 289Right-handed alpha
Helix 76
AI4
D
298 311Right-handed alpha
Helix 77
AI5
D
312 320Right-handed alpha
Helix 78
AI6
D
322 339Right-handed alpha
Helix 79
AI7
D
345 358Right-handed alpha
Helix 80
AI8
D
368 382Right-handed alpha
Helix 81
AI9
D
407 418Right-handed alpha
Helix 82
AJ1
D
422 430Right-handed alpha
Helix 83
AJ2
E
11 23Right-handed alpha
Helix 84
AJ3
E
38 41Right-handed 310
Helix 85
AJ4
E
42 54Right-handed alpha
Helix 86
AJ5
E
68 79Right-handed alpha
Helix 87
AJ6
E
99 109Right-handed alpha
Helix 88
AJ7
E
127 133Right-handed 310
Helix 89
AJ8
E
136 143Right-handed alpha
Helix 90
AJ9
E
143 149Right-handed alpha
Helix 91
AK1
E
161 165Right-handed 310
Helix 92
AK2
E
183 192Right-handed alpha
Helix 93
AK3
E
200 216Right-handed alpha
Helix 94
AK4
E
221 232Right-handed alpha
Helix 95
AK5
E
232 242Right-handed alpha
Helix 96
AK6
E
253 266Right-handed alpha
Helix 97
AK7
E
303 319Right-handed alpha
Helix 98
AK8
E
320 322Right-handed 310
Helix 99
AK9
E
323 328Right-handed alpha
Helix 100
AL1
E
358 371Right-handed alpha
Helix 101
AL2
E
377 390Right-handed alpha
Helix 102
AL3
E
413 424Right-handed alpha
Helix 103
AL4
E
426 431Right-handed alpha
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There are 12 sheets in PDB entry 5UJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
616 620parallel
Strand 3
A
648 652parallel
Strand 4
A
528 534parallel
Strand 5
A
675 678parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
844 847anti-parallel
Strand 3
A
832 834anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 340first strand
Strand 2
B
388 393parallel
Strand 3
B
418 424parallel
Strand 4
B
310 314parallel
Strand 5
B
443 446parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 549first strand
Strand 2
B
555 558anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 250first strand
Strand 2
C
103 104parallel
Strand 3
C
274 275parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
217 219parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 302first strand
Strand 2
C
581 582parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
696 697first strand
Strand 2
C
703 704anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 100first strand
Strand 2
D
154 159parallel
Strand 3
D
187 193parallel
Strand 4
D
61 66parallel
Strand 5
D
215 217parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 387first strand
Strand 2
D
402 404anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 62first strand
Strand 2
E
120 125parallel
Strand 3
E
152 158parallel
Strand 4
E
32 36parallel
Strand 5
E
175 178parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
356 357first strand
Strand 2
E
407 409anti-parallel
Strand 3
E
393 395anti-parallel
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