Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UKM entry

There are 3 chains in PDB entry 5UKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 31	ARG 669
B	SER 2	ASN 340
G	SER 8	PHE 67

There are 37 helices in PDB entry 5UKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	38	Right-handed 310
Helix 2	AA2	A	39	50	Right-handed alpha
Helix 3	AA3	A	54	60	Right-handed alpha
Helix 4	AA4	A	61	75	Right-handed alpha
Helix 5	AA5	A	79	95	Right-handed alpha
Helix 6	AA6	A	97	113	Right-handed alpha
Helix 7	AA7	A	113	119	Right-handed alpha
Helix 8	AA8	A	125	138	Right-handed alpha
Helix 9	AA9	A	142	145	Right-handed 310
Helix 10	AB1	A	146	158	Right-handed alpha
Helix 11	AB2	A	159	168	Right-handed alpha
Helix 12	AB3	A	168	182	Right-handed alpha
Helix 13	AB4	A	224	231	Right-handed alpha
Helix 14	AB5	A	232	247	Right-handed alpha
Helix 15	AB6	A	278	287	Right-handed alpha
Helix 16	AB7	A	290	311	Right-handed alpha
Helix 17	AB8	A	319	321	Right-handed 310
Helix 18	AB9	A	353	357	Right-handed 310
Helix 19	AC1	A	358	363	Right-handed alpha
Helix 20	AC2	A	370	387	Right-handed alpha
Helix 21	AC3	A	398	409	Right-handed alpha
Helix 22	AC4	A	418	429	Right-handed alpha
Helix 23	AC5	A	432	436	Right-handed 310
Helix 24	AC6	A	443	449	Right-handed alpha
Helix 25	AC7	A	450	454	Right-handed 310
Helix 26	AC8	A	457	463	Right-handed alpha
Helix 27	AC9	A	499	504	Right-handed alpha
Helix 28	AD1	A	505	509	Right-handed 310
Helix 29	AD2	A	513	523	Right-handed alpha
Helix 30	AD3	A	525	547	Right-handed alpha
Helix 31	AD4	A	636	660	Right-handed alpha
Helix 32	AD5	B	3	24	Right-handed alpha
Helix 33	AD6	B	29	34	Right-handed alpha
Helix 34	AD7	G	9	24	Right-handed alpha
Helix 35	AD8	G	29	45	Right-handed alpha
Helix 36	AD9	G	46	48	Right-handed 310
Helix 37	AE1	G	55	59	Right-handed 310

There are 11 sheets in PDB entry 5UKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	199	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	216	223	anti-parallel
Strand 4	A	266	271	anti-parallel
Strand 5	A	257	262	anti-parallel
Strand 6	A	511	512	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	340	341	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	331	333	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	602	first strand
Strand 2	A	587	591	anti-parallel
Strand 3	A	577	584	anti-parallel
Strand 4	A	561	568	anti-parallel
Strand 5	A	629	633	anti-parallel
Strand 6	A	618	624	anti-parallel
Strand 7	A	606	613	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UKM