Analysis of interatomic Contacts of Structural Units in PDB entry:
5UM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UM9 entry

There are 4 chains in PDB entry 5UM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLN 342
D
 A 1 T 18
E
 T 4 T 17
F
 A 1 C 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5UM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
22 27Right-handed 310
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
61 77Right-handed alpha
Helix 5
AA5
A
90 92Right-handed 310
Helix 6
AA6
A
93 109Right-handed alpha
Helix 7
AA7
A
109 114Right-handed alpha
Helix 8
AA8
A
119 130Right-handed alpha
Helix 9
AA9
A
134 149Right-handed alpha
Helix 10
AB1
A
158 169Right-handed alpha
Helix 11
AB2
A
179 183Right-handed 310
Helix 12
AB3
A
209 217Right-handed alpha
Helix 13
AB4
A
219 232Right-handed alpha
Helix 14
AB5
A
242 254Right-handed alpha
Helix 15
AB6
A
255 261Right-handed alpha
Helix 16
AB7
A
275 285Right-handed alpha
Helix 17
AB8
A
302 311Right-handed alpha
Helix 18
AB9
A
317 336Right-handed alpha
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There are 2 sheets in PDB entry 5UM9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
205 208anti-parallel
Strand 3
A
189 192anti-parallel
Strand 4
A
174 176parallel
Strand 5
A
29 34parallel
Strand 6
A
79 85parallel
Strand 7
A
152 154parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
51 52anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il