Analysis of interatomic Contacts of Structural Units in PDB entry:
5UO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UO5 entry

There are 2 chains in PDB entry 5UO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 302	LYS 722
B	ARG 304	LYS 722

There are 38 helices in PDB entry 5UO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	320	325	Right-handed 310
Helix 2	AA2	A	355	374	Right-handed alpha
Helix 3	AA3	A	379	397	Right-handed alpha
Helix 4	AA4	A	402	416	Right-handed alpha
Helix 5	AA5	A	422	426	Right-handed 310
Helix 6	AA6	A	439	456	Right-handed alpha
Helix 7	AA7	A	457	459	Right-handed 310
Helix 8	AA8	A	503	513	Right-handed alpha
Helix 9	AA9	A	542	546	Right-handed 310
Helix 10	AB1	A	556	563	Right-handed 310
Helix 11	AB2	A	595	600	Right-handed alpha
Helix 12	AB3	A	600	605	Right-handed alpha
Helix 13	AB4	A	611	619	Right-handed alpha
Helix 14	AB5	A	625	628	Right-handed 310
Helix 15	AB6	A	629	649	Right-handed alpha
Helix 16	AB7	A	655	675	Right-handed alpha
Helix 17	AB8	A	680	685	Right-handed alpha
Helix 18	AB9	A	689	693	Right-handed 310
Helix 19	AC1	A	714	718	Right-handed 310
Helix 20	AC2	B	320	325	Right-handed 310
Helix 21	AC3	B	355	374	Right-handed alpha
Helix 22	AC4	B	379	397	Right-handed alpha
Helix 23	AC5	B	402	416	Right-handed alpha
Helix 24	AC6	B	422	426	Right-handed 310
Helix 25	AC7	B	439	456	Right-handed alpha
Helix 26	AC8	B	457	459	Right-handed 310
Helix 27	AC9	B	503	513	Right-handed alpha
Helix 28	AD1	B	542	546	Right-handed 310
Helix 29	AD2	B	558	563	Right-handed 310
Helix 30	AD3	B	595	600	Right-handed alpha
Helix 31	AD4	B	600	605	Right-handed alpha
Helix 32	AD5	B	611	619	Right-handed alpha
Helix 33	AD6	B	625	628	Right-handed 310
Helix 34	AD7	B	629	649	Right-handed alpha
Helix 35	AD8	B	655	675	Right-handed alpha
Helix 36	AD9	B	680	685	Right-handed alpha
Helix 37	AE1	B	689	698	Right-handed 310
Helix 38	AE2	B	714	718	Right-handed 310

There are 14 sheets in PDB entry 5UO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	309	first strand
Strand 2	A	316	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	463	466	parallel
Strand 3	A	589	590	anti-parallel
Strand 4	A	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	527	530	anti-parallel
Strand 3	A	537	539	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	550	first strand
Strand 2	A	565	567	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	584	first strand
Strand 2	A	576	579	anti-parallel
Strand 3	A	708	710	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	594	first strand
Strand 2	A	653	654	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	316	319	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	463	466	parallel
Strand 3	B	589	590	anti-parallel
Strand 4	B	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	479	first strand
Strand 2	B	527	530	anti-parallel
Strand 3	B	537	539	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	550	first strand
Strand 2	B	565	567	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	584	first strand
Strand 2	B	576	579	anti-parallel
Strand 3	B	708	710	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	594	first strand
Strand 2	B	653	654	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UO5