Analysis of interatomic Contacts of Structural Units in PDB entry:
5UOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UOR entry

There are 2 chains in PDB entry 5UOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 671LYS 939
B
 LEU 670LYS 939
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5UOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
715 730Right-handed alpha
Helix 2
AA2
A
761 769Right-handed alpha
Helix 3
AA3
A
776 796Right-handed alpha
Helix 4
AA4
A
842 846Right-handed 310
Helix 5
AA5
A
847 852Right-handed alpha
Helix 6
AA6
A
859 877Right-handed alpha
Helix 7
AA7
A
891 898Right-handed alpha
Helix 8
AA8
A
908 918Right-handed alpha
Helix 9
AA9
A
928 935Right-handed alpha
Helix 10
AB1
B
718 730Right-handed alpha
Helix 11
AB2
B
761 769Right-handed alpha
Helix 12
AB3
B
776 797Right-handed alpha
Helix 13
AB4
B
822 826Right-handed 310
Helix 14
AB5
B
842 846Right-handed 310
Helix 15
AB6
B
847 854Right-handed alpha
Helix 16
AB7
B
855 858Right-handed 310
Helix 17
AB8
B
859 877Right-handed alpha
Helix 18
AB9
B
881 885Right-handed 310
Helix 19
AC1
B
886 898Right-handed alpha
Helix 20
AC2
B
908 919Right-handed alpha
Helix 21
AC3
B
928 935Right-handed alpha
Helix 22
AC4
B
936 939Right-handed 310
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There are 8 sheets in PDB entry 5UOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
685 688anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
693 699anti-parallel
Strand 3
A
705 712anti-parallel
Strand 4
A
749 755anti-parallel
Strand 5
A
740 746anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
827 828anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 811first strand
Strand 2
A
818 820anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
685 688anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
705 712anti-parallel
Strand 4
B
749 755anti-parallel
Strand 5
B
740 746anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 800first strand
Strand 2
B
827 828anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 811first strand
Strand 2
B
818 820anti-parallel
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