Analysis of interatomic Contacts of Structural Units in PDB entry:
5UP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UP3 entry

There are 2 chains in PDB entry 5UP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 670VAL 940
B
 LEU 671LYS 939
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5UP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
721 730Right-handed alpha
Helix 2
AA2
A
761 769Right-handed alpha
Helix 3
AA3
A
776 797Right-handed alpha
Helix 4
AA4
A
805 807Right-handed 310
Helix 5
AA5
A
842 846Right-handed 310
Helix 6
AA6
A
847 854Right-handed alpha
Helix 7
AA7
A
855 858Right-handed 310
Helix 8
AA8
A
859 877Right-handed alpha
Helix 9
AA9
A
881 885Right-handed 310
Helix 10
AB1
A
886 897Right-handed alpha
Helix 11
AB2
A
908 919Right-handed alpha
Helix 12
AB3
A
928 935Right-handed alpha
Helix 13
AB4
A
936 939Right-handed 310
Helix 14
AB5
B
722 731Right-handed alpha
Helix 15
AB6
B
761 769Right-handed alpha
Helix 16
AB7
B
776 796Right-handed alpha
Helix 17
AB8
B
847 852Right-handed 310
Helix 18
AB9
B
859 877Right-handed alpha
Helix 19
AC1
B
889 898Right-handed alpha
Helix 20
AC2
B
908 919Right-handed alpha
Helix 21
AC3
B
922 926Right-handed 310
Helix 22
AC4
B
928 935Right-handed alpha
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There are 7 sheets in PDB entry 5UP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
692 699anti-parallel
Strand 3
A
685 689anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
692 699anti-parallel
Strand 3
A
705 712anti-parallel
Strand 4
A
749 755anti-parallel
Strand 5
A
740 746anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 811first strand
Strand 2
A
818 820anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
685 688anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
673 675first strand
Strand 2
B
693 699anti-parallel
Strand 3
B
705 712anti-parallel
Strand 4
B
749 755anti-parallel
Strand 5
B
740 746anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 800first strand
Strand 2
B
827 828anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 811first strand
Strand 2
B
818 820anti-parallel
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