Analysis of interatomic Contacts of Structural Units in PDB entry:
5V5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5V5Z entry

There is 1 chain in PDB entry 5V5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 25GLU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5V5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 41Right-handed alpha
Helix 2
AA2
A
60 65Right-handed alpha
Helix 3
AA3
A
67 80Right-handed alpha
Helix 4
AA4
A
96 105Right-handed alpha
Helix 5
AA5
A
114 127Right-handed alpha
Helix 6
AA6
A
135 147Right-handed alpha
Helix 7
AA7
A
148 150Right-handed 310
Helix 8
AA8
A
151 173Right-handed alpha
Helix 9
AA9
A
188 205Right-handed alpha
Helix 10
AB1
A
206 212Right-handed alpha
Helix 11
AB2
A
217 226Right-handed alpha
Helix 12
AB3
A
227 228Right-handed 310
Helix 13
AB4
A
229 234Right-handed 310
Helix 14
AB5
A
240 266Right-handed alpha
Helix 15
AB6
A
275 283Right-handed alpha
Helix 16
AB7
A
293 326Right-handed alpha
Helix 17
AB8
A
327 345Right-handed alpha
Helix 18
AB9
A
347 351Right-handed 310
Helix 19
AC1
A
352 357Right-handed alpha
Helix 20
AC2
A
359 373Right-handed alpha
Helix 21
AC3
A
405 411Right-handed alpha
Helix 22
AC4
A
423 428Right-handed 310
Helix 23
AC5
A
465 469Right-handed 310
Helix 24
AC6
A
472 490Right-handed alpha
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There are 6 sheets in PDB entry 5V5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
86 87anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
401 404parallel
Strand 4
A
379 383anti-parallel
Strand 5
A
112 113anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
517 522anti-parallel
Strand 3
A
491 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
395 396anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
452 453anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
511 512anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il